diff options
Diffstat (limited to 'PKGBUILD')
| -rw-r--r-- | PKGBUILD | 95 |
1 files changed, 51 insertions, 44 deletions
@@ -1,64 +1,71 @@ -# Maintainer: Philipp A. <flying-sheep@web.de> +# Maintainer: Michael Schubert <mschu.dev at gmail> github.com/mschubert/PKGBUILDs +# Contributor: Philipp A. <flying-sheep@web.de> # Contributor: Kyle Meyer <kyle@kyleam.com> pkgname=snakemake -pkgver=7.16.1 +pkgver=8.4.0 pkgrel=1 pkgdesc='Python-based language and execution environment for GNU Make-like workflows' arch=(any) url='https://snakemake.readthedocs.io' depends=( - python - python-wrapt - python-requests - python-ratelimiter - python-yaml - python-configargparse - python-appdirs - python-datrie - python-jsonschema - python-docutils - python-gitpython - python-psutil - jupyter-nbformat - python-toposort - python-connection_pool - 'python-pulp>=2.0' - 'python-smart_open>=3.0' - python-stopit - python-tabulate - python-yte - python-jinja - python-reretry + python-appdirs + python-immutables + python-configargparse + python-connection_pool + python-datrie + python-docutils + python-gitpython + python-humanfriendly + python-jinja + python-jsonschema + jupyter-nbformat + python-packaging + python-psutil + 'python-pulp>=2.0' + python-yaml + python-requests + python-reretry + 'python-smart_open>=3.0' + python-snakemake-interface-executor-plugins + python-snakemake-interface-common + python-snakemake-interface-storage-plugins + python-stopit + python-tabulate + python-throttler + python-toposort + python-wrapt + python-yte + python-dpath + python-conda-inject ) makedepends=(python-setuptools python-build python-installer python-wheel) optdepends=( - 'python-pygments: For report generation' - 'python-biopython: For GenBank/NCBI Entrez support' - 'python-easywebdav: For WebDAV support' - 'python-pysftp: For SFTP support' - 'python-boto3: For AWS support' - 'python-moto: For AWS support' - 'python-dropbox: For Dropbox support' - 'python-ftputil: For FTP support' - 'python-xrootd: For XRootD support' - 'slacker: For messaging' + 'python-pygments: For report generation' + 'python-biopython: For GenBank/NCBI Entrez support' + 'python-easywebdav: For WebDAV support' + 'python-pysftp: For SFTP support' + 'python-boto3: For AWS support' + 'python-moto: For AWS support' + 'python-dropbox: For Dropbox support' + 'python-ftputil: For FTP support' + 'python-xrootd: For XRootD support' + 'slacker: For messaging' ) license=(MIT) source=("https://files.pythonhosted.org/packages/source/${pkgname::1}/$pkgname/$pkgname-$pkgver.tar.gz") -sha256sums=('db485c8c9cfea3f0f8e229e4b410ab2727d7cbe4d6c6c197d30dd0ef1cd58989') +sha256sums=('c875e88c561370c5b545622fe7397cc0d7d2399c285044c83d1309816d0d224f') build() { - cd "$srcdir/$pkgname-$pkgver" - python -m build --wheel --no-isolation + cd "$srcdir/$pkgname-$pkgver" + python -m build --wheel --no-isolation } package() { - cd "$srcdir/$pkgname-$pkgver" - python -m installer --destdir="$pkgdir" dist/*.whl - local pyver=$(python -c 'import sys; print("{}.{}".format(*sys.version_info[:2]))') - - install -d "$pkgdir/etc/bash_completion.d" - PYTHONPATH="$pkgdir/usr/lib/python$pyver/site-packages:$PYTHONPATH" \ - "$pkgdir/usr/bin/snakemake" --bash-completion >"$pkgdir/etc/bash_completion.d/snakemake" + cd "$srcdir/$pkgname-$pkgver" + python -m installer --destdir="$pkgdir" dist/*.whl +# local pyver=$(python -c 'import sys; print("{}.{}".format(*sys.version_info[:2]))') +# install -d "$pkgdir/etc/bash_completion.d" +# PYTHONPATH="$pkgdir/usr/lib/python$pyver/site-packages:$PYTHONPATH" \ +# "$pkgdir/usr/bin/snakemake" --bash-completion >"$pkgdir/etc/bash_completion.d/snakemake" } |