diff options
Diffstat (limited to 'PKGBUILD')
| -rw-r--r-- | PKGBUILD | 33 |
1 files changed, 33 insertions, 0 deletions
diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..80b1be6c53cf --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,33 @@ +# Maintainer: Clint Valentine <valentine.clint@gmail.com> + +pkgname=snpeff +pkgver=4_3t +pkgrel=1 +pkgdesc="Genetic variant annotation and effect prediction toolbox" +arch=('any') +url="http://snpeff.sourceforge.net/" +license=('LGPLv3') +depends=('java-runtime>=8') +provides=('snpeff') +conflicts=('snpeff') +source=( + "http://sourceforge.net/projects/${pkgname}/files/snpEff_v${pkgver}_core.zip" + "snpeff" + "snpsift" +) +md5sums=( + '1fa84a703580a423e27f1e14a945901c' + '9f0415d2e713f0acffec4d88253e769d' + '3a2f8a17dfffca77375806d2dee12b0c' +) + +package() { + cd "${srcdir}/" + + install -Dm644 "snpEff/snpEff.jar" "${pkgdir}/usr/share/java/snpEff_v${pkgver}/snpEff.jar" + install -Dm644 "snpEff/SnpSift.jar" "${pkgdir}/usr/share/java/snpEff_v${pkgver}/SnpSift.jar" + install -Dm644 "snpEff/snpEff.config" "${pkgdir}/usr/share/java/snpEff_v${pkgver}/snpEff.config" + + install -Dm755 "snpeff" "${pkgdir}/usr/bin/snpEff" + install -Dm755 "snpsift" "${pkgdir}/usr/bin/SnpSift" +} |