diff options
Diffstat (limited to 'PKGBUILD')
| -rw-r--r-- | PKGBUILD | 31 |
1 files changed, 25 insertions, 6 deletions
@@ -4,23 +4,41 @@ pkgname='stanc' pkgdesc="A package for obtaining Bayesian inference using the No-U-Turn sampler, a variant of Hamiltonian Monte Carlo." pkgver=2.32.0_rc1 -pkgrel=1 +pkgrel=2 arch=('i686' 'x86_64') url='https://mc-stan.org/' license=('BSD') depends=('gcc-libs') makedepends=('texlive-bin' 'texlive-core' 'doxygen' # needed if compile against system library - -# 'gtest' 'benchmark' 'sundials' 'boost' 'eigen' 'tbb' 'stanmath' -# 'python-cpplint' 'opencl-headers' 'rapidjson' 'cli11' +'gtest' 'benchmark' 'sundials' 'boost' 'eigen' 'stanmath' +'python-cpplint' 'opencl-headers' 'rapidjson' +# 'cli11' +# 'tbb': no <tbb/tbb_stddef.h> ) provides=("cmdstan") -source=(https://github.com/stan-dev/cmdstan/releases/download/v${pkgver/_/-}/cmdstan-${pkgver/_/-}.tar.gz) -sha512sums=('6e734ce47561bf9b2d8674bedd0ddd1e22f476d324ac546a368e0ee925ebcb02f1c3da6d8bdc65fcbca15133f2a19c5a4ce46defee1a1b7264b458f76a151a87') +source=(https://github.com/stan-dev/cmdstan/releases/download/v${pkgver/_/-}/cmdstan-${pkgver/_/-}.tar.gz +local +) +sha512sums=('6e734ce47561bf9b2d8674bedd0ddd1e22f476d324ac546a368e0ee925ebcb02f1c3da6d8bdc65fcbca15133f2a19c5a4ce46defee1a1b7264b458f76a151a87' + '94f898b78f66e517b61d6ce2295e72a07e0a9154852c8b8607600fcb968bf106870f3dcde94ae32d7d8f6663e69cfaa021cdea9a2dc88a96479e86686e126950') +prepare(){ + cd "${srcdir}/cmdstan-${pkgver/_/-}" + cp ${srcdir}/local make/local + cp ${srcdir}/local stan/make/local + # sed -i 's|CLI11/CLI11.hpp|CLI/CLI.hpp|g' src/cmdstan/stansummary.cpp +} build() { cd "${srcdir}/cmdstan-${pkgver/_/-}" + cd stan/lib/stan_math/lib/tbb_2020.3/ + mkdir ${srcdir}/tbb + make tbb + find build -type f -executable -exec install -DTm644 "{}" "${srcdir}/tbb/{}" \; + mv build/*_release/*.so* ${srcdir}/tbb/ + cd "${srcdir}/cmdstan-${pkgver/_/-}" + export LDFLAGS="-L${srcdir}/tbb -ltbb -Wl,-rpath,/usr/lib/stan" + export CXXFLAGS="-fPIC -Isrc -Istan/src -I/usr/include/eigen3 -Istan/lib/stan_math/lib/tbb_2020.3/include/ -D_REENTRANT -Ilib/CLI11-1.9.1/" make build } @@ -48,4 +66,5 @@ package() { # Install LICENSE file: install -dm755 "${pkgdir}/usr/share/licenses/stan" cp -r "stan/licenses/." "${pkgdir}/usr/share/licenses/stan/." + install -Dm755 ${srcdir}/tbb/*.so* -t "${pkgdir}/usr/lib/stan" } |