summarylogtreecommitdiffstats
path: root/PKGBUILD
diff options
context:
space:
mode:
Diffstat (limited to 'PKGBUILD')
-rwxr-xr-xPKGBUILD19
1 files changed, 10 insertions, 9 deletions
diff --git a/PKGBUILD b/PKGBUILD
index 1d87d2c38106..bf2deb3b82ad 100755
--- a/PKGBUILD
+++ b/PKGBUILD
@@ -1,6 +1,6 @@
# Maintainer: Nigel Michki <nigeil@yahoo.com>
pkgname=star-seq-alignment
-pkgver=v2.5.3a
+pkgver=2.7.1a
pkgrel=1
pkgdesc="An RNA-seq alignment suite, by Alexander Dobin"
arch=('i686'
@@ -13,23 +13,24 @@ depends=()
makedepends=('wget'
'gcc')
optdepends=()
-source=('https://github.com/alexdobin/STAR/archive/2.5.3a.tar.gz')
-md5sums=('baf8d1b62a50482cfa13acb7652dc391')
+source=('https://github.com/alexdobin/STAR/archive/2.7.1a.tar.gz')
+md5sums=(SKIP)
prepare() {
- msg2 "Downloading files"
- wget $source
+# msg2 "Downloading files"
+# cd $srcdir
+# wget $source
msg2 "Decompressing files"
- tar -xzvf $srcdir/2.5.3a.tar.gz
+ tar -xzvf $pkgver.tar.gz -C $srcdir/
}
build() {
- cd $srcdir/STAR-2.5.3a/source
- make STAR
+ cd $srcdir/STAR-$pkgver/source
+ make LDFLAGSextra=-flto CXXFLAGSextra="-flto -march=native" -j 20 STAR
}
package() {
mkdir $pkgdir/usr
mkdir $pkgdir/usr/bin
- cp $srcdir/STAR-2.5.3a/source/STAR $pkgdir/usr/bin/star-seq-alignment
+ cp $srcdir/STAR-$pkgver/source/STAR $pkgdir/usr/bin/star-seq-alignment
}