diff options
Diffstat (limited to 'PKGBUILD')
-rwxr-xr-x | PKGBUILD | 19 |
1 files changed, 10 insertions, 9 deletions
@@ -1,6 +1,6 @@ # Maintainer: Nigel Michki <nigeil@yahoo.com> pkgname=star-seq-alignment -pkgver=v2.5.3a +pkgver=2.7.1a pkgrel=1 pkgdesc="An RNA-seq alignment suite, by Alexander Dobin" arch=('i686' @@ -13,23 +13,24 @@ depends=() makedepends=('wget' 'gcc') optdepends=() -source=('https://github.com/alexdobin/STAR/archive/2.5.3a.tar.gz') -md5sums=('baf8d1b62a50482cfa13acb7652dc391') +source=('https://github.com/alexdobin/STAR/archive/2.7.1a.tar.gz') +md5sums=(SKIP) prepare() { - msg2 "Downloading files" - wget $source +# msg2 "Downloading files" +# cd $srcdir +# wget $source msg2 "Decompressing files" - tar -xzvf $srcdir/2.5.3a.tar.gz + tar -xzvf $pkgver.tar.gz -C $srcdir/ } build() { - cd $srcdir/STAR-2.5.3a/source - make STAR + cd $srcdir/STAR-$pkgver/source + make LDFLAGSextra=-flto CXXFLAGSextra="-flto -march=native" -j 20 STAR } package() { mkdir $pkgdir/usr mkdir $pkgdir/usr/bin - cp $srcdir/STAR-2.5.3a/source/STAR $pkgdir/usr/bin/star-seq-alignment + cp $srcdir/STAR-$pkgver/source/STAR $pkgdir/usr/bin/star-seq-alignment } |