diff options
Diffstat (limited to 'PKGBUILD')
| -rw-r--r-- | PKGBUILD | 79 |
1 files changed, 61 insertions, 18 deletions
@@ -1,29 +1,27 @@ # Maintainer: Ronny Lorenz <ronny at tbi dot univie dot ac dot at> -pkgname=viennarna -pkgver=2.2.0 -pkgrel=3 +pkgbase=viennarna +pkgname=('viennarna' 'python2-rna' 'perl-rna') +pkgver=2.2.1 +pkgrel=1 pkgdesc="RNA Secondary Structure Prediction and Comparison" arch=('x86_64' 'i686') license=('Custom') url="http://www.tbi.univie.ac.at/RNA" -depends=( 'perl' - 'python2') -optdepends=('gsl: use a variety of optimization methods in RNApvmin' - 'gri: create 2D plots of secondary structure landscape with RNA2Dfold') -conflicts=('viennarna') -makedepends=( 'libtool' +groups=('viennarna-package') +makedepends=( 'perl' + 'python2' + 'libtool' 'check') -provides=('Kinfold=1.3' 'RNAforester=2.0' "viennarna2=${pkgver}") source=(http://www.tbi.univie.ac.at/RNA/packages/source/ViennaRNA-${pkgver}.tar.gz) options=('staticlibs' '!strip') -sha256sums=('78910cc1dc44de22ba081d841c84a32dfc52f0ec186447eafd82cb15cfdbf991') +sha256sums=('fdf3e101b170762f37f891fb019793dab5fc69fbeb5dbe56891b3c89b0918c5c') build() { cd "${srcdir}/ViennaRNA-${pkgver}" - ./configure --with-cluster --prefix=/usr PYTHON_VERSION=2 || return 1 - make || return 1 + ./configure --with-cluster --prefix=/usr INSTALLDIRS=vendor PYTHON_VERSION=2 + make } check() { @@ -31,19 +29,64 @@ check() { make check } -package() { +package_viennarna() { + depends=('perl') + optdepends=('gsl: use a variety of optimization methods in RNApvmin' + 'gri: create 2D plots of secondary structure landscape with RNA2Dfold') + provides=('Kinfold=1.3' 'RNAforester=2.0' "viennarna2=${pkgver}" "libRNA=${pkgver}") + cd "${srcdir}/ViennaRNA-${pkgver}" - make DESTDIR="${pkgdir}" install || return 1 + + # install executables + cd src/bin/ + make DESTDIR="${pkgdir}" install + cd ../Kinfold + make DESTDIR="${pkgdir}" install + cd ../RNAforester + install -Dm755 src/RNAforester "${pkgdir}/usr/bin/" + install -Dm644 man/RNAforester.1* "${pkgdir}/usr/share/man/man1/" + cd ../Utils + make DESTDIR="${pkgdir}" install + cd ../Cluster + make DESTDIR="${pkgdir}" install + cd ../.. + + # install library and header files + cd src/ViennaRNA + make DESTDIR="${pkgdir}" install + cd ../.. + + # install manpages, documentation, and misc files + cd man + make DESTDIR="${pkgdir}" install + cd ../doc + make DESTDIR="${pkgdir}" install + cd ../misc + make DESTDIR="${pkgdir}" install + cd .. install -Dm644 COPYING "$pkgdir/usr/share/licenses/$pkgname/LICENSE" # cleanup after dirty install ... + install -dm755 "$pkgdir"/usr/bin/vendor_perl for perlscript in "$pkgdir"/usr/share/ViennaRNA/bin/*.pl ; do - mv "$perlscript" "$pkgdir/usr/bin/$(basename "$perlscript" .pl)" + mv "$perlscript" "$pkgdir/usr/bin/vendor_perl/" done - mv "$pkgdir"/usr/share/ViennaRNA/bin/* "$pkgdir"/usr/bin - rmdir "$pkgdir/usr/share/ViennaRNA/bin" # no need for that file it is outdated anyway rm $pkgdir/usr/share/info/dir } + +package_python2-rna() { + depends=('python2' viennarna="${pkgver}") + cd "${srcdir}/ViennaRNA-${pkgver}" + cd interfaces/Python + make DESTDIR="${pkgdir}" install +} + +package_perl-rna() { + depends=('perl' viennarna="${pkgver}") + cd "${srcdir}/ViennaRNA-${pkgver}" + cd interfaces/Perl + make DESTDIR="${pkgdir}" install +} |