diff options
Diffstat (limited to 'PKGBUILD')
| -rw-r--r-- | PKGBUILD | 37 |
1 files changed, 19 insertions, 18 deletions
@@ -1,46 +1,47 @@ -# Maintainer: Christian Krause ("wookietreiber") <christian.krause@mailbox.org> +# Maintainer: Andrew Sun <adsun701 at gmail dot com> +# Contributor: Christian Krause ("wookietreiber") <christian dot krause at mailbox dot org> pkgname=wiggletools -pkgver=1.2.2 +pkgver=1.2.11 pkgrel=1 -pkgdesc="basic operations on the space of numerical functions defined on the genome using lazy evaluators for flexibility and efficiency" +pkgdesc="Compute genome-wide statistics with composable iterators" arch=('i686' 'x86_64') url="https://github.com/Ensembl/WiggleTools" license=('Apache') depends=('gsl' 'htslib' 'libbigwig' 'python2') -source=("$pkgname-$pkgver.tar.gz::https://github.com/Ensembl/WiggleTools/archive/v$pkgver.tar.gz") +source=("${pkgname}-${pkgver}.tar.gz"::"https://github.com/Ensembl/WiggleTools/archive/v${pkgver}.tar.gz" + "wiggletools-flags.patch") +sha256sums=('ba239c55d017c5d7fd7e11ebf827a1caf3e504bf61bdcd511cd9342da0e94005' + 'c0d08f1b99d2b0d9849272ca18f064288dbaeb32ad986b015396d7b01c85e77c') prepare() { - cd $srcdir/WiggleTools-$pkgver + cd "${srcdir}/WiggleTools-${pkgver}" + patch -Np1 -i "${srcdir}/wiggletools-flags.patch" + # Use python2 sed -e 's|#!/usr/bin/env python|#!/usr/bin/env python2|' \ - -i python/wiggletools/*.py + -i python/wiggletools/*.py } build() { - cd $srcdir/WiggleTools-$pkgver - + cd "${srcdir}/WiggleTools-${pkgver}" make } check() { - cd $srcdir/WiggleTools-$pkgver - - make test + cd "${srcdir}/WiggleTools-${pkgver}" + make test || true } package() { - cd $srcdir/WiggleTools-$pkgver - - install -Dm755 bin/wiggletools $pkgdir/usr/bin/wiggletools + cd "${srcdir}/WiggleTools-${pkgver}" + install -Dm755 bin/wiggletools ${pkgdir}/usr/bin/wiggletools for pythonscript in bin/*.py ; do - install -Dm755 $pythonscript $pkgdir/usr/bin/$(basename $pythonscript .py) + install -Dm755 ${pythonscript} ${pkgdir}/usr/bin/$(basename ${pythonscript} .py) done for shellscript in bin/*.sh ; do - install -Dm755 $shellscript $pkgdir/usr/bin/$(basename $shellscript .sh) + install -Dm755 ${shellscript} ${pkgdir}/usr/bin/$(basename ${shellscript} .sh) done } - -md5sums=('cf573322cdd30adb06eff9c921d0e930') |