diff options
Diffstat (limited to 'PKGBUILD')
| -rw-r--r-- | PKGBUILD | 28 |
1 files changed, 3 insertions, 25 deletions
@@ -1,31 +1,19 @@ # Maintainer: Christian Krause ("wookietreiber") <kizkizzbangbang@googlemail.com> pkgname=wiggletools -pkgver=1.1 +pkgver=1.2.1 pkgrel=1 pkgdesc="basic operations on the space of numerical functions defined on the genome using lazy evaluators for flexibility and efficiency" arch=('i686' 'x86_64') url="https://github.com/Ensembl/WiggleTools" license=('Apache') -depends=('gsl' 'python2') -makedepends=('git' 'libmariadbclient' 'libpng' 'unzip') +depends=('gsl' 'htslib' 'libbigwig' 'python2') source=("$pkgname-$pkgver.tar.gz::https://github.com/Ensembl/WiggleTools/archive/v$pkgver.tar.gz") -md5sums=('7b7052b755415936324d7919756bd070') +md5sums=('516a63ee41dcf63104a0664735e75cee') prepare() { cd $srcdir/WiggleTools-$pkgver - git archive --format=zip -9 --remote=git://genome-source.cse.ucsc.edu/kent.git beta src/userApps > userApps.zip - unzip -o -d userApps -j userApps.zip - rm userApps.zip - - sed -e 's|-ltinfo||g' \ - -i samtools/Makefile - - # use python2 - sed -e 's|python test.py|python2 test.py|' \ - -i Makefile - sed -e 's|#!/usr/bin/env python|#!/usr/bin/env python2|' \ -i python/wiggletools/*.py } @@ -33,14 +21,6 @@ prepare() { build() { cd $srcdir/WiggleTools-$pkgver - pushd userApps - make fetchSource - make - popd - - export KENT_SRC=$PWD/userApps/kent/src - export TABIX_SRC=$PWD/userApps/samtabix - make } @@ -59,8 +39,6 @@ package() { install -Dm755 $pythonscript $pkgdir/usr/bin/$(basename $pythonscript .py) done - rm $pkgdir/usr/bin/__init__ - for shellscript in bin/*.sh ; do install -Dm755 $shellscript $pkgdir/usr/bin/$(basename $shellscript .sh) done |