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-3dmod
-3dmodv
-addtostack
-adocxmlconv
-alignframes
-alignlog
-alterheader
-archiveorig
-assemblevol
-autofidseed
-autopatchfit
-avganova
-avgstack
-avgstatplot
-b3dcatfiles
-b3dcopy
-b3dhostname
-b3dremove
-b3dtouch
-b3dwinps
-batchruntomo
-beadtrack
-binvol
-blendmont
-boxavg
-boxstartend
-calc
-ccderaser
-checkmtmod
-checkxforms
-chunksetup
-clip
-clipmodel
-clonemodel
-clonevolume
-collectmmm
-colornewst
-combinefft
-contourmod
-convertmod
-copyheader
-copytomocoms
-corrsearch3d
-cryoposition
-ctfphaseflip
-ctfplotter
-densmatch
-densnorm
-dm2mrc
-dm3props
-dualvolmatch
-echo2
-edgeeraser
-edgemtf
-edgepatches
-edmont
-edpiecepoint
-endmodel
-enhance
-eraser
-etomo
-etomo.jar
-etomoPluginDemo
-excise
-excludeviews
-expandargs
-extposition
-extractmagrad
-extractpieces
-extracttilts
-extstack
-fenestra
-fftrans
-fiberpitch
-filltomo
-filterplot
-findbeads3d
-findcontrast
-finddistort
-findgradient
-findhotpixels
-findsection
-findsirtdiffs
-findwarp
-finishjoin
-fitpatches
-fixboundaries
-fixmont
-flattenwarp
-framewatcher
-genhstplt
-goodframe
-gpumonitor
-gputilttest
-header
-howflared
-idfprocess
-imavgstat
-imod
-imod2meta
-imod2obj
-imod2patch
-imod2rib
-imod2vrml
-imod2vrml2
-imodauto
-imodchopconts
-imodcpuload
-imodcurvature
-imod-dist
-imodexplode
-imodextract
-imodfillin
-imodfindbeads
-imodhelp
-imodinfo
-imodjoin
-imodkillgroup
-imodmesh
-imodmop
-imodpsview
-imodqtassist
-imodsendevent
-imodsetvalues
-imodsortsurf
-imodtrans
-imoduntar
-imodv
-joinmodel
-joinwarp2model
-makecomfile
-makegradtable
-makejoincom
-makepyramid
-MarkersCorrespond
-matchorwarp
-matchrotpairs
-matchshifts
-matchvol
-maxjoinsize
-midas
-model2point
-montagesize
-mrc2tif
-mrcbyte
-mrctaper
-mrcx
-mtdetect
-mtffilter
-mtk
-mtlengths
-mtmodel
-mtoverlap
-mtpairing
-mtrotlong
-mtsmooth
-mtteach
-nad_eed_3d
-nda
-newstack
-numericdiff
-onegenplot
-onepatchcorr
-patch2imod
-patchcorr3d
-patchcrawl3d
-pickbestseed
-point2model
-preNAD
-preNID
-processchunks
-prochunks.csh
-queuechunk
-RAPTOR
-raw2mrc
-rawtiltcoords
-realscalemod
-rec2imod
-recombine
-reducecont
-reducemont
-reducemtmod
-refinematch
-remapmodel
-repackseed
-resamplemod
-restrictalign
-rotatevol
-rotmont
-runimodqtapp
-runraptor
-sampletilt
-scalemodel
-sda
-selfalign
-setlibpath
-settmpdir
-setupcombine
-setupcoms
-setuplong
-setupstitch
-sirtsetup
-slashfindspheres
-slashmasksort
-slurmCleanup.sh
-slurmInit.sh
-smoothsurf
-solvematch
-sortbeadsurfs
-splitblend
-splitcombine
-splitcorrection
-splitmrc
-splittilt
-squeezevol
-startprocess
-stitchalign
-subimage
-subimanova
-subimstat
-subm
-submfg
-subtomosetup
-subtractcurves
-sumdensity
-taperoutvol
-tapervoledge
-tif2mrc
-tilt
-tiltalign
-tiltxcorr
-tomodataplots
-tomopieces
-tomopitch
-tomosnapshot
-tomostitch
-transferfid
-trimvol
-vmstocsh
-vmstopy
-warpvol
-wmod2imod
-xcorrstack
-xf2rotmagstr
-xfalign
-xfforfidless
-xfinterstack
-xfinverse
-xfjointomo
-xfmodel
-xfproduct
-xfsimplex
-xftoxg
-xyzproj