1 files changed, 0 insertions, 74 deletions
diff --git a/fix_entrypoint.patch b/fix_entrypoint.patch
deleted file mode 100644
index cb004817eb72..000000000000
--- a/fix_entrypoint.patch
+++ /dev/null
@@ -1,74 +0,0 @@
---- pdb2pqr/__init__.py	2020-07-03 20:02:43.000000000 +0300
-+++ pdb2pqr/__init__.py	2020-08-25 20:48:59.940600307 +0300
-@@ -6,11 +6,11 @@
- For more information, see http://www.poissonboltzmann.org/
- """
- import logging
- from sys import version_info
- assert version_info >= (3, 5)
--from .main import main, build_parser
-+from .main import main_driver, build_parser
- 
- 
- _LOGGER = logging.getLogger(__name__)
- logging.captureWarnings(True)
- 
-@@ -18,6 +18,6 @@
- if __name__ == "__main__":
-     logging.basicConfig(level=logging.DEBUG)
-     logging.captureWarnings(True)
-     parser = build_parser()
-     args = parser.parse_args()
--    main(args)
-+    main_driver(args)
---- pdb2pqr/__main__.py	2020-07-03 20:02:43.000000000 +0300
-+++ pdb2pqr/__main__.py	2020-08-25 20:49:15.213902523 +0300
-@@ -6,11 +6,11 @@
- For more information, see http://www.poissonboltzmann.org/
- """
- import logging
- from sys import version_info
- assert version_info >= (3, 5)
--from pdb2pqr.main import main, build_parser
-+from pdb2pqr.main import main_driver, build_parser
- 
- 
- _LOGGER = logging.getLogger(__name__)
- logging.captureWarnings(True)
- 
-@@ -18,6 +18,6 @@
- if __name__ == "__main__":
-     logging.basicConfig(level=logging.DEBUG)
-     logging.captureWarnings(True)
-     parser = build_parser()
-     args = parser.parse_args()
--    main(args)
-+    main_driver(args)
---- pdb2pqr/main.py	2020-07-03 20:02:43.000000000 +0300
-+++ pdb2pqr/main.py	2020-08-25 20:50:27.673754924 +0300
-@@ -533,11 +533,11 @@
-     lines = io.print_protein_atoms(matched_atoms, args.keep_chain)
- 
-     return {"lines": lines, "header": header, "missed_residues": missing_atoms}
- 
- 
--def main(args):
-+def main_driver(args):
-     """Main driver for running program from the command line.
- 
-     Validate inputs, launch PDB2PQR, handle output.
- 
-     Args:
-@@ -581,5 +581,12 @@
-               missing_lines=results["missed_residues"], is_cif=is_cif)
- 
-     if args.apbs_input:
-         raise NotImplementedError("Missing argument for APBS input file.")
-         io.dump_apbs(args.output_pqr)
-+
-+
-+def main():
-+    """Hook for command-line usage."""
-+    parser = build_parser()
-+    args = parser.parse_args()
-+    main_driver(args)