diff options
Diffstat (limited to 'harden.patch')
| -rw-r--r-- | harden.patch | 37 |
1 files changed, 37 insertions, 0 deletions
diff --git a/harden.patch b/harden.patch new file mode 100644 index 000000000000..214fe133fae3 --- /dev/null +++ b/harden.patch @@ -0,0 +1,37 @@ +--- spaln-ver3.0.2.orig/src/Makefile.in 2023-10-31 07:23:58.000000000 +0530 ++++ spaln-ver3.0.2.new/src/Makefile.in 2023-11-17 00:07:42.903202161 +0530 +@@ -6,14 +6,14 @@ + alndbs_dir = /db/seqdb + CXX = g++ + #CXX = clang++ +-CFLAGS = -O3 -march=native ++CFLAGS += -O3 -march=native + RANLIB = ranlib + LD = g++ + AR = ar ru + DEL = rm -f + DEFLT = -DM_THREAD=1 + +-CXX := $(CXX) $(CFLAGS) $(DEFLT) ++CXX := $(CXX) $(CFLAGS) $(CPPFLAGS) $(DEFLT) + + .SUFFIXES: .o .cc .h .sh + +@@ -88,13 +88,13 @@ + ls $(SRC) $(HDR) + + spaln: spaln.cc blksrc.o $(SLIB) +- $(CXX) -o $@ spaln.cc blksrc.o $(SLIB) $(ILIB) ++ $(CXX) -o $@ spaln.cc blksrc.o $(SLIB) $(ILIB) $(LDFLAGS) + sortgrcd: sortgrcd.cc $(SLIB) +- $(CXX) -o $@ sortgrcd.cc $(SLIB) $(ILIB) ++ $(CXX) -o $@ sortgrcd.cc $(SLIB) $(ILIB) $(LDFLAGS) + makdbs: makdbs.cc dbs.h seq.h bitpat.h $(SLIB) +- $(CXX) -o $@ makdbs.cc $(SLIB) $(ILIB) ++ $(CXX) -o $@ makdbs.cc $(SLIB) $(ILIB) $(LDFLAGS) + makmdm: makmdm.cc mdm.h $(CLIB) +- $(CXX) -o $@ makmdm.cc $(CLIB) $(ILIB) ++ $(CXX) -o $@ makmdm.cc $(CLIB) $(ILIB) $(LDFLAGS) + + dvn: dvn.cc autocomp.h $(ULIB) + $(CXX) -o $@ dvn.cc $(ULIB) $(ILIB) |