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+# Configuration file for RTG.
+
+# This file is automatically created upon first run, and may be edited
+# to allow some customization of default behaviour.  In a
+# multi-machine environment, this file can be used to achieve
+# machine-specific configuration either by placing in /etc/rtg.cfg on
+# each machine or in the rtg installation directory values with the
+# name rtg.$(hostname -s).cfg, e.g. rtg.bioinformatics.cfg
+
+
+# The path to the java executable (need not be full path if in $PATH).
+# If unset, RTG will use the bundled JRE if present, otherwise
+# will expect java to be on $PATH
+# RTG_JAVA="java"
+
+# Amount of memory to allocate to RTG.  Use G suffix for gigabytes.
+# If unset, allow RTG to use up to 90% of available RAM (see RTG_MEM_PCT)
+# RTG_MEM="4G"
+# Note that memory allocation can also be overridden on a per-command basis, e.g:
+# $ rtg RTG_MEM=24G population ...
+
+# If RTG_MEM is unset, use this percentage of total RAM.
+# The default is 90 percent.
+# RTG_MEM_PCT=90
+
+
+# Attempt to send crash logs to Real Time Genomics, true to enable, false to disable
+RTG_TALKBACK=false
+
+# Enable simple usage logging, true to enable. Default is no logging.
+RTG_USAGE=
+
+# Server URL when usage logging to a server. Default is to use RTG hosted server.
+# RTG_USAGE_HOST=
+
+# If performing single-user file-based usage logging, this specifies the directory to log to.
+# RTG_USAGE_DIR=
+
+# List of optional fields to add to usage logging (when enabled).
+# If unset do not add any of these fields. (commandline may contain information
+# considered sensitive)
+# RTG_USAGE_OPTIONAL=username,hostname,commandline
+RTG_USAGE_OPTIONAL=username,hostname
+
+
+# Allows specification of the HTTP proxy to use for
+# talkback/usage, specified in host:port form.
+# If unset, assume no http proxy is required.
+# RTG_PROXY=my.proxy.host:3128
+
+
+# Directory in which to look for pipeline reference datasets.
+# If unset, uses the references subdirectory of this installation.
+# RTG_REFERENCES_DIR=
+
+# Directory in which to look for AVR models.
+# If unset, uses the models subdirectory of this installation.
+# RTG_MODELS_DIR=
+
+# Allows passing additional arguments passed to the JVM. e.g:
+# RTG_JAVA_OPTS="-Djava.io.tmpdir=XXYY -XX:+UseLargePages"
+
+
+# Set the number of threads to use when not otherwise specified via command line flags.
+# The default behavior is to allocate one thread per machine core.
+# RTG_DEFAULT_THREADS=1
+
+