1 files changed, 0 insertions, 525 deletions
diff --git a/sasfit.patch b/sasfit.patch
deleted file mode 100644
index eeb87982144c..000000000000
--- a/sasfit.patch
+++ /dev/null
@@ -1,525 +0,0 @@
-diff -aurN SASfit-0.94.7/src/cmake/CPackConfig.cmake SASfit-0.94.7.new/src/cmake/CPackConfig.cmake
---- SASfit-0.94.7/src/cmake/CPackConfig.cmake	1970-01-01 01:00:00.000000000 +0100
-+++ SASfit-0.94.7.new/src/cmake/CPackConfig.cmake	2016-11-04 11:36:37.239715813 +0100
-@@ -0,0 +1,40 @@
-+# src/cmake/CPackConfig.cmake
-+#
-+# Copyright (c) 2008-2011, Paul Scherrer Institute (PSI)
-+#
-+# This file is part of SASfit.
-+#
-+# SASfit is free software: you can redistribute it and/or modify
-+# it under the terms of the GNU General Public License as published by
-+# the Free Software Foundation, either version 3 of the License, or
-+# (at your option) any later version.
-+#
-+# SASfit is distributed in the hope that it will be useful,
-+# but WITHOUT ANY WARRANTY without even the implied warranty of
-+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-+# GNU General Public License for more details.
-+#
-+# You should have received a copy of the GNU General Public License
-+# along with SASfit.  If not, see <http://www.gnu.org/licenses/>.
-+
-+# Author(s) of this file:
-+#   Ingo Bressler (ingo.bressler@bam.de)
-+
-+SET(CPACK_CMAKE_GENERATOR "Unix Makefiles")
-+set(CPACK_PACKAGE_DESCRIPTION_FILE "../Readme.txt")
-+set(CPACK_PACKAGE_DESCRIPTION_SUMMARY "SASfit is a SAS tool")
-+set(CPACK_PACKAGE_EXECUTABLES "sasfit")
-+set(CPACK_PACKAGE_INSTALL_DIRECTORY "sasfit 0.94.7")
-+set(CPACK_PACKAGE_NAME "SASfit")
-+set(CPACK_PACKAGE_VENDOR "PSI")
-+set(CPACK_PACKAGE_VERSION "0.94.7")
-+set(CPACK_PACKAGE_VERSION_MAJOR "0")
-+set(CPACK_PACKAGE_VERSION_MINOR "94.7")
-+set(CPACK_INSTALLED_DIRECTORIES "/home/wachaandras/aur/sasfit/src/sasfit_0.94.7_linux_x86_64;.")
-+set(CPACK_PACKAGE_FILE_NAME "sasfit_0.94.7_linux_x86_64")
-+if(NOT WIN32)
-+	set(CPACK_GENERATOR "TBZ2")
-+else(NOT WIN32)
-+	set(CPACK_GENERATOR "ZIP")
-+endif(NOT WIN32)
-+
-diff -aurN SASfit-0.94.7/src/cmake/create_source_package.list SASfit-0.94.7.new/src/cmake/create_source_package.list
---- SASfit-0.94.7/src/cmake/create_source_package.list	2016-04-25 09:27:08.000000000 +0200
-+++ SASfit-0.94.7.new/src/cmake/create_source_package.list	2016-11-04 11:36:37.239715813 +0100
-@@ -178,183 +178,6 @@
- doc/images/missing.png
- src/doc/footer.html
- src/doc/mainpage.h
--src/f2c/CMakeLists.txt
--src/f2c/abort_.c
--src/f2c/arith.h
--src/f2c/arithchk.c
--src/f2c/backspac.c
--src/f2c/c_abs.c
--src/f2c/c_cos.c
--src/f2c/c_div.c
--src/f2c/c_exp.c
--src/f2c/c_log.c
--src/f2c/c_sin.c
--src/f2c/c_sqrt.c
--src/f2c/cabs.c
--src/f2c/close.c
--src/f2c/COPYRIGHT
--src/f2c/d_abs.c
--src/f2c/d_acos.c
--src/f2c/d_asin.c
--src/f2c/d_atan.c
--src/f2c/d_atn2.c
--src/f2c/d_cnjg.c
--src/f2c/d_cos.c
--src/f2c/d_cosh.c
--src/f2c/d_dim.c
--src/f2c/d_exp.c
--src/f2c/d_imag.c
--src/f2c/d_int.c
--src/f2c/d_lg10.c
--src/f2c/d_log.c
--src/f2c/d_mod.c
--src/f2c/d_nint.c
--src/f2c/d_prod.c
--src/f2c/d_sign.c
--src/f2c/d_sin.c
--src/f2c/d_sinh.c
--src/f2c/d_sqrt.c
--src/f2c/d_tan.c
--src/f2c/d_tanh.c
--src/f2c/derf_.c
--src/f2c/derfc_.c
--src/f2c/dfe.c
--src/f2c/dolio.c
--src/f2c/dtime_.c
--src/f2c/due.c
--src/f2c/ef1asc_.c
--src/f2c/ef1cmc_.c
--src/f2c/endfile.c
--src/f2c/erf_.c
--src/f2c/erfc_.c
--src/f2c/err.c
--src/f2c/etime_.c
--src/f2c/exit_.c
--src/f2c/f2c.h
--src/f2c/f2c.lib
--src/f2c/f2c_math.h
--src/f2c/f77_aloc.c
--src/f2c/f77vers.c
--src/f2c/fio.h
--src/f2c/fmt.c
--src/f2c/fmt.h
--src/f2c/fmtlib.c
--src/f2c/fp.h
--src/f2c/ftell64_.c
--src/f2c/ftell_.c
--src/f2c/getarg_.c
--src/f2c/getenv_.c
--src/f2c/h_abs.c
--src/f2c/h_dim.c
--src/f2c/h_dnnt.c
--src/f2c/h_indx.c
--src/f2c/h_len.c
--src/f2c/h_mod.c
--src/f2c/h_nint.c
--src/f2c/h_sign.c
--src/f2c/hl_ge.c
--src/f2c/hl_gt.c
--src/f2c/hl_le.c
--src/f2c/hl_lt.c
--src/f2c/i77vers.c
--src/f2c/i_abs.c
--src/f2c/i_dim.c
--src/f2c/i_dnnt.c
--src/f2c/i_indx.c
--src/f2c/i_len.c
--src/f2c/i_mod.c
--src/f2c/i_nint.c
--src/f2c/i_sign.c
--src/f2c/iargc_.c
--src/f2c/iio.c
--src/f2c/ilnw.c
--src/f2c/inquire.c
--src/f2c/l_ge.c
--src/f2c/l_gt.c
--src/f2c/l_le.c
--src/f2c/l_lt.c
--src/f2c/lbitbits.c
--src/f2c/lbitshft.c
--src/f2c/lio.h
--src/f2c/lread.c
--src/f2c/lwrite.c
--src/f2c/main.c
--src/f2c/open.c
--src/f2c/pow_ci.c
--src/f2c/pow_dd.c
--src/f2c/pow_di.c
--src/f2c/pow_hh.c
--src/f2c/pow_ii.c
--src/f2c/pow_qq.c
--src/f2c/pow_ri.c
--src/f2c/pow_zi.c
--src/f2c/pow_zz.c
--src/f2c/qbitbits.c
--src/f2c/qbitshft.c
--src/f2c/r_abs.c
--src/f2c/r_acos.c
--src/f2c/r_asin.c
--src/f2c/r_atan.c
--src/f2c/r_atn2.c
--src/f2c/r_cnjg.c
--src/f2c/r_cos.c
--src/f2c/r_cosh.c
--src/f2c/r_dim.c
--src/f2c/r_exp.c
--src/f2c/r_imag.c
--src/f2c/r_int.c
--src/f2c/r_lg10.c
--src/f2c/r_log.c
--src/f2c/r_mod.c
--src/f2c/r_nint.c
--src/f2c/r_sign.c
--src/f2c/r_sin.c
--src/f2c/r_sinh.c
--src/f2c/r_sqrt.c
--src/f2c/r_tan.c
--src/f2c/r_tanh.c
--src/f2c/rawio.h
--src/f2c/rdfmt.c
--src/f2c/rewind.c
--src/f2c/rsfe.c
--src/f2c/rsli.c
--src/f2c/rsne.c
--src/f2c/s_cat.c
--src/f2c/s_cmp.c
--src/f2c/s_copy.c
--src/f2c/s_paus.c
--src/f2c/s_rnge.c
--src/f2c/s_stop.c
--src/f2c/sfe.c
--src/f2c/sig_die.c
--src/f2c/signal1.h
--src/f2c/signal_.c
--src/f2c/signbit.c
--src/f2c/sue.c
--src/f2c/sysdep1.h
--src/f2c/system_.c
--src/f2c/typesize.c
--src/f2c/uio.c
--src/f2c/uninit.c
--src/f2c/util.c
--src/f2c/wref.c
--src/f2c/wrtfmt.c
--src/f2c/wsfe.c
--src/f2c/wsle.c
--src/f2c/wsne.c
--src/f2c/xwsne.c
--src/f2c/z_abs.c
--src/f2c/z_cos.c
--src/f2c/z_div.c
--src/f2c/z_exp.c
--src/f2c/z_log.c
--src/f2c/z_sin.c
--src/f2c/z_sqrt.c
--src/f2c/sasfit_wofz.c
--src/fftw/CMakeLists.txt
--src/fftw/fftw-3.3.3.tar.gz
--src/gsl/gsl-1.16.tar.gz
--src/tcl/tcl-8.4.13.tar.gz
- src/sasfit_common/CMakeLists.txt
- src/sasfit_common/include/bool.h
- src/sasfit_common/include/sasfit_common.h
-diff -aurN SASfit-0.94.7/src/cmake/Findf2c.cmake SASfit-0.94.7.new/src/cmake/Findf2c.cmake
---- SASfit-0.94.7/src/cmake/Findf2c.cmake	2016-04-25 09:27:08.000000000 +0200
-+++ SASfit-0.94.7.new/src/cmake/Findf2c.cmake	2016-11-04 11:36:37.239715813 +0100
-@@ -36,35 +36,7 @@
- #                              against.
- # f2c_FOUND        - Do not attempt to use if "no" or undefined.
- 
--GET_FILENAME_COMPONENT(CURRENT_DIR ${CMAKE_CURRENT_LIST_FILE} PATH)
--GET_FILENAME_COMPONENT(CURRENT_DIR "${CURRENT_DIR}/.." ABSOLUTE)
--
--FIND_PATH(f2c_INCLUDE_DIR f2c.h
--    ${CURRENT_DIR}/f2c/
--    NO_DEFAULT_PATH
--)
--  
--FIND_LIBRARY(f2c_LIBRARY f2c
--    ${CURRENT_DIR}/f2c/lib/
--    ${CURRENT_DIR}/f2c/lib/debug/
--    ${CURRENT_DIR}/f2c/lib/release/
--)
--
--SET(f2c_INCLUDE_DIRS ${f2c_INCLUDE_DIR})
--SET(f2c_LIBRARIES ${f2c_LIBRARY})
--
--IF(f2c_INCLUDE_DIR)
--  SET(f2c_FOUND "YES")
--  IF(NOT f2c_LIBRARY)
--    MESSAGE(STATUS "f2c library not found!")
--  ENDIF(NOT f2c_LIBRARY)
--ELSE(f2c_INCLUDE_DIR)
--  MESSAGE(STATUS "f2c include dir not found!")
--ENDIF(f2c_INCLUDE_DIR)
--
--MESSAGE(STATUS "found f2c inc: ${f2c_INCLUDE_DIRS}")
--
--IF(NOT f2c_FOUND)
--    MESSAGE(SEND_ERROR "The f2c library was not found. For adjustments use ${CMAKE_CURRENT_LIST_FILE}.")
--ENDIF(NOT f2c_FOUND)
-+set(f2c_FOUND TRUE)
-+set(f2c_INCLUDE_DIRS /usr/include)
-+set(f2c_LIBRARIES /usr/lib/libf2c.so)
- 
-diff -aurN SASfit-0.94.7/src/cmake/FindFFTW.cmake SASfit-0.94.7.new/src/cmake/FindFFTW.cmake
---- SASfit-0.94.7/src/cmake/FindFFTW.cmake	2016-04-25 09:27:08.000000000 +0200
-+++ SASfit-0.94.7.new/src/cmake/FindFFTW.cmake	2016-11-04 11:36:37.239715813 +0100
-@@ -45,32 +45,6 @@
- # FFTW_EXE_LINKER_FLAGS = rpath on Unix
- 
- message("find FFTW")
--get_package_dir(${SASFIT_ROOT_DIR}/src/fftw)
--
--# file include dir of custom build library
--FIND_PATH(FFTW_INCLUDE_DIRS
--        NAMES fftw3.h
--        PATHS ${SOURCE_DIR}
--        PATH_SUFFIXES include
--        NO_DEFAULT_PATH
--        DOC "FFTW header include dir"
--)
--
--# get library dirs
--FIND_FILE(FFTW_STATIC_LIB
--        NAMES libfftw3.a
--        PATHS ${SOURCE_DIR}
--        PATH_SUFFIXES lib
--        NO_DEFAULT_PATH
--        DOC "FFTW static library"
--)
--
--if(FFTW_STATIC_LIB)
--        set(FFTW_LIBRARIES ${FFTW_STATIC_LIB})
--endif()
--
--set(FFTW_FOUND FALSE)
--if(IS_DIRECTORY ${FFTW_INCLUDE_DIRS} AND FFTW_LIBRARIES)
--    set(FFTW_FOUND TRUE)
--endif()
--
-+set(FFTW_FOUND TRUE)
-+set(FFTW_LIBRARIES /usr/lib/libfftw3.so)
-+set(FFTW_INCLUDE_DIRS /usr/include)
-diff -aurN SASfit-0.94.7/src/cmake/FindGSL.cmake SASfit-0.94.7.new/src/cmake/FindGSL.cmake
---- SASfit-0.94.7/src/cmake/FindGSL.cmake	2016-04-25 09:27:08.000000000 +0200
-+++ SASfit-0.94.7.new/src/cmake/FindGSL.cmake	2016-11-04 11:42:03.675471653 +0100
-@@ -20,71 +20,6 @@
- # 
- # GSL_INCLUDE_DIRS     = where to find headers 
- 
--get_package_dir(${SASFIT_ROOT_DIR}/src/gsl)
--
--# file include dir of custom build library
--FIND_PATH(GSL_INCLUDE_DIRS
--    NAMES gsl/gsl_math.h
--    PATHS ${SOURCE_DIR}
--    PATH_SUFFIXES include
--    NO_DEFAULT_PATH
--    DOC "GSL header include dir"
--)
--
--# get library dirs
--FIND_LIBRARY(GSL_LIBRARY
--	NAMES gsl libgsl
--    PATHS ${SOURCE_DIR}
--	PATH_SUFFIXES lib
--    NO_DEFAULT_PATH
--	DOC "GSL library dir"
--)
--
--FIND_FILE(GSL_STATIC_LIBRARY
--	NAMES gsl.a libgsl.a
--    PATHS ${SOURCE_DIR}
--	PATH_SUFFIXES lib
--    NO_DEFAULT_PATH
--	DOC "GSL static library dir"
--)
--
--IF(NOT GSL_LIBRARY)
--	SET(GSL_LIBRARY ${GSL_STATIC_LIBRARY})
--ENDIF()
--
--FIND_LIBRARY(GSLCBLAS_LIBRARY
--	NAMES gslcblas libgslcblas
--    PATHS ${SOURCE_DIR}
--	PATH_SUFFIXES lib
--    NO_DEFAULT_PATH
--	DOC "GSL cblas library dir"
--)
--
--FIND_FILE(GSLCBLAS_STATIC_LIBRARY
--	NAMES gslcblas.a libgslcblas.a
--    PATHS ${SOURCE_DIR}
--	PATH_SUFFIXES lib
--    NO_DEFAULT_PATH
--	DOC "GSL cblas static library dir"
--)
--	
--IF(NOT GSLCBLAS_LIBRARY)
--	SET(GSLCBLAS_LIBRARY ${GSLCBLAS_STATIC_LIBRARY})
--ENDIF()
--
--SET(GSL_LIBRARIES
--  ${GSL_LIBRARY}
--  ${GSLCBLAS_LIBRARY}
--)
--SET(GSL_STATIC_LIBRARIES 
--  ${GSL_STATIC_LIBRARY}
--  ${GSLCBLAS_STATIC_LIBRARY}
--)
--
--set(GSL_FOUND FALSE)
--if(IS_DIRECTORY ${GSL_INCLUDE_DIRS} AND GSL_LIBRARIES)
--    set(GSL_FOUND TRUE)
--endif()
--message("GSL_FOUND: '${GSL_FOUND}'")
--
--# vim: set ts=4 sw=4 sts=4 tw=0:
-+set(GSL_INCLUDE_DIRS /usr/include)
-+set(GSL_LIBRARIES /usr/lib/libgsl.so /usr/lib/libgslcblas.so /usr/lib/libm.so)
-+set(GSL_FOUND TRUE)
-diff -aurN SASfit-0.94.7/src/cmake/Findsundials.cmake SASfit-0.94.7.new/src/cmake/Findsundials.cmake
---- SASfit-0.94.7/src/cmake/Findsundials.cmake	2016-04-25 09:27:08.000000000 +0200
-+++ SASfit-0.94.7.new/src/cmake/Findsundials.cmake	2016-11-04 11:36:37.249715376 +0100
-@@ -42,31 +42,15 @@
- # sundials_LINK_DIRECTORIES = link directories, useful for rpath on Unix
- # sundials_EXE_LINKER_FLAGS = rpath on Unix
- 
--message("find sundials")
--get_package_dir(${SASFIT_ROOT_DIR}/src/sundials)
--
--set(sundials_INCLUDE_DIRS ${SOURCE_DIR}/include)
--
--# search build directory
--file(GLOB sundials_BUILD_DIRS ${SOURCE_DIR}/*/CMakeCache.txt)
--list(LENGTH sundials_BUILD_DIRS NUM_DIRS)
--if(NUM_DIRS GREATER 0)
--        list(GET sundials_BUILD_DIRS 0 sundials_BUILD_DIR)
--        get_filename_component(sundials_BUILD_DIR
--                               "${sundials_BUILD_DIR}" DIRECTORY)
--#        message("sundials_BUILD_DIR: '${sundials_BUILD_DIR}'")
--        list(APPEND sundials_INCLUDE_DIRS ${sundials_BUILD_DIR}/include)
--endif()
--
--file(GLOB sundials_STATIC_LIBS ${sundials_BUILD_DIR}/src/*/*.a)
--
--if(sundials_STATIC_LIBS)
--        set(sundials_LIBRARIES ${sundials_STATIC_LIBS})
--endif()
--
--list(LENGTH sundials_INCLUDE_DIRS NUM_INC_DIRS)
--set(sundials_FOUND FALSE)
--if(NUM_INC_DIRS EQUAL 2 AND sundials_LIBRARIES)
--        set(sundials_FOUND TRUE)
--endif()
- 
-+set(sundials_INCLUDE_DIRS /usr/include)
-+set(sundials_LIBRARIES /usr/lib/libsundials_arkode.so 
-+    /usr/lib/libsundials_cvode.so
-+    /usr/lib/libsundials_cvodes.so
-+    /usr/lib/libsundials_ida.so
-+    /usr/lib/libsundials_idas.so
-+    /usr/lib/libsundials_kinsol.so
-+    /usr/lib/libsundials_nvecparallel.so
-+    /usr/lib/libsundials_nvecserial.so
-+    /usr/lib/liblapack.so)
-+set(sundials_FOUND TRUE)
-diff -aurN SASfit-0.94.7/src/cmake/FindTCL.cmake SASfit-0.94.7.new/src/cmake/FindTCL.cmake
---- SASfit-0.94.7/src/cmake/FindTCL.cmake	2016-04-25 09:27:08.000000000 +0200
-+++ SASfit-0.94.7.new/src/cmake/FindTCL.cmake	2016-11-04 11:43:07.262704532 +0100
-@@ -10,52 +10,6 @@
- # TCL_INCLUDE_DIRS     = where to find headers 
- 
- message("find TCL")
--get_package_dir(${SASFIT_ROOT_DIR}/src/tcl)
--
--# file include dir of custom build library
--FIND_PATH(TCL_INCLUDE_DIRS
--    NAMES tcl.h
--    PATHS ${SOURCE_DIR}
--    PATH_SUFFIXES include
--    NO_DEFAULT_PATH
--    DOC "TCL include dir"
--)
--
--FIND_FILE(TCL_STATIC_LIB
--    NAMES libtcl8.4.a libtcl84s.a
--    PATHS ${SOURCE_DIR}
--    PATH_SUFFIXES lib
--    NO_DEFAULT_PATH
--    DOC "TCL static library"
--)
--
--FIND_FILE(TCL_STATIC_STUBS_LIB
--    NAMES libtclstub8.4.a libtclstub84s.a
--    PATHS ${SOURCE_DIR}
--    PATH_SUFFIXES lib
--    NO_DEFAULT_PATH
--    DOC "TCL static stubs library"
--)
--
--find_program(TCL_SH
--    NAMES tclsh tclsh84 tclsh84s tclsh8.4
--    PATHS ${SOURCE_DIR}
--    PATH_SUFFIXES bin
--    NO_DEFAULT_PATH
--    DOC "TCL interpreter program"
--)
--
--if(TCL_LIBRARY OR TCL_STATIC_LIB OR TCL_STATIC_STUBS_LIB)
--    SET(TCL_LIBRARIES
--        ${TCL_LIBRARY}
--        ${TCL_STATIC_LIB}
--        ${TCL_STATIC_STUBS_LIB}
--    )
--endif()
--
--set(TCL_FOUND FALSE)
--if(IS_DIRECTORY "${TCL_INCLUDE_DIRS}" AND TCL_LIBRARIES AND TCL_SH)
--    set(TCL_FOUND TRUE)
--endif()
--
--# vim: set ts=4 sw=4 sts=4 tw=0:
-+set(TCL_INCLUDE_DIRS /usr/include)
-+set(TCL_LIBRARIES /usr/lib/libtcl.so /usr/lib/libtclstub8.6.a)
-+set(TCL_FOUND TRUE)
-diff -aurN SASfit-0.94.7/src/cmake/SasfitCmakeUtils.cmake SASfit-0.94.7.new/src/cmake/SasfitCmakeUtils.cmake
---- SASfit-0.94.7/src/cmake/SasfitCmakeUtils.cmake	2016-04-25 09:27:08.000000000 +0200
-+++ SASfit-0.94.7.new/src/cmake/SasfitCmakeUtils.cmake	2016-11-04 11:36:37.249715376 +0100
-@@ -496,10 +496,10 @@
-         # avoid modifying LD_LIBRARY_PATH,
-         # using dyn.lib.loader in sasfit.sh instead
-         list(APPEND PREREQ
--            "/lib/*-linux-gnu/ld-[0-9].[0-9][0-9].so"
--            "/lib/*-linux-gnu/libpthread.so.[0-9]"
--            "/usr/lib/*-linux-gnu/libXrender.so.[0-9]"
--            "/usr/lib/*-linux-gnu/libXfixes.so.[0-9]"
-+            "/lib/ld-[0-9].[0-9][0-9].so"
-+            "/lib/libpthread.so.[0-9]"
-+            "/usr/lib/libXrender.so.[0-9]"
-+            "/usr/lib/libXfixes.so.[0-9]"
-             )
-     elseif(WIN32)
-         find_library(pthread_LIB pthread-2)
-diff -aurN SASfit-0.94.7/src/CMakeLists.txt SASfit-0.94.7.new/src/CMakeLists.txt
---- SASfit-0.94.7/src/CMakeLists.txt	2016-04-25 09:27:08.000000000 +0200
-+++ SASfit-0.94.7.new/src/CMakeLists.txt	2016-11-04 11:44:32.738987670 +0100
-@@ -234,7 +234,7 @@
- 
- target_link_libraries(sasfit
-         ${TCL_LIBRARIES}
--        ${GSL_STATIC_LIBRARIES}
-+        ${GSL_LIBRARIES}
-         ${FFTW_LIBRARIES}
-         ${sundials_LIBRARIES}
-         ${OpenMP_LIB}