diff options
Diffstat (limited to 'test_optdepends.sh')
| -rw-r--r-- | test_optdepends.sh | 276 |
1 files changed, 276 insertions, 0 deletions
diff --git a/test_optdepends.sh b/test_optdepends.sh new file mode 100644 index 000000000000..21e68917ac11 --- /dev/null +++ b/test_optdepends.sh @@ -0,0 +1,276 @@ +#!/bin/bash + +# Test if external packages for PETSC are installed + +# CONFOPTS="" + +# # External downloads +# for external_pkg in hypre fblaslapack metis parmetis superlu_dist mumps scalapack; do +# CONFOPTS+=" --download-${external_pkg}=1" +# done + +type mpicc >/dev/null && CONFOPTS+=" --with-cc=mpicc" +type mpicxx >/dev/null && CONFOPTS+=" --with-cxx=mpicxx" +type mpifort >/dev/null && CONFOPTS+=" --with-fc=mpifort" + +# BOOST: Free peer-reviewed portable C++ source libraries +if [ -f "$(whereis -b libboost_mpi.so | cut -d' ' -f2)" ]; then + CONFOPTS+=" --with-boost=1" +fi; + +# CGNS: Recording and recovering computer data +if [ -f "$(whereis -b libcgns.so | cut -d' ' -f2)" ]; then + CONFOPTS+=" --with-cgns=1" +fi + +# eigen: Lightweight C++ template library for vector and matrix math +EIGEN_DIR="$(pkgconf --cflags-only-I eigen3)" +EIGEN_DIR="${EIGEN_DIR##-I}" +if [ -d "${EIGEN_DIR}" ]; then + CONFOPTS+=" --with-eigen=1 --with-eigen-include=${EIGEN_DIR}" +fi + +# fftw: Fast-Fourier Transform +if [ -f "$(whereis -b libfftw3_mpi.so | cut -d' ' -f2)" ]; then + CONFOPTS+=" --with-fftw=1" +fi + +# GDB: GNU debugger +if [ -f "$(whereis -b gdb | cut -d' ' -f2)" ]; then + CONFOPTS+=" --with-debugger=gdb" +fi + +# # GLUT (requires OpenGL) +# if [ -f "$(whereis -b libglut.so | cut -d' ' -f2)" ]; then +# CONFOPTS+=" --with-glut=1" +# CONFOPTS+=" --with-glut-pkg-config=" +# CONFOPTS+="$(dirname $(pkgconf --path glut))" +# fi + +# HDF5: large files +if [[ "$(h5stat -V)" ]]; then + CONFOPTS+=" --with-hdf5=1" +fi + +# hwloc: abstraction of hierarchical architectures +if [ -f "$(whereis -b libhwloc.so | cut -d' ' -f2)" ]; then + CONFOPTS+=" --with-hwloc=1" + CONFOPTS+=" --with-hwloc-pkg-config=" + CONFOPTS+="$(dirname $(pkgconf --path hwloc))" +fi + +# Hypre: Large and sparse linear with massive parallel computing +if [ -f "$(whereis -b libHYPRE.so | cut -d' ' -f2)" ]; then + CONFOPTS+=" --with-hypre=1" + CONFOPTS+=" --with-hypre-lib=[/usr/lib/libHYPRE.so]" + CONFOPTS+=" --with-hypre-include=/usr/include" +fi + +# MED: Data Modelization and Exchanges (meshes) +if [ -f "$(whereis -b libmed.so | cut -d' ' -f2)" ]; then + CONFOPTS+=" --with-med=1" +fi + +# METIS: Automatic meshing partitioning +if [ -f "$(whereis -b libmetis.so | cut -d' ' -f2)" ]; then + CONFOPTS+=" --with-metis=1" + # parmetis support + if [ -f "/usr/include/parmetis.h" ]; then + CONFOPTS+=" --with-parmetis=1" + fi +fi + +# # MPI4Py +# if [ -n "$(pacman -Qsq mpi4py)" ]; then +# mpi4py_inc="$(pacman -Ql python-mpi4py | awk '/mpi4py.h$/{print $NF}')" +# CONFOPTS+=" --with-mpi4py=1" +# CONFOPTS+=" --with-mpi4py-include=" +# CONFOPTS+="$(dirname $mpi4py_inc)" +# CONFOPTS+=" --with-mpi4py-lib=" +# CONFOPTS+="$(pacman -Ql python-mpi4py | awk '/.*\.so$/{print $NF}' | tr ' \n' ',')" +# fi + +# MUMPS: Sparse solver library +if [ -f "$(whereis -b libmumps_common.so | cut -d' ' -f2)" ]; then + CONFOPTS+=" --with-mumps=1" + # MUMPS_LIBS="[/usr/lib/libcmumps.so," + # MUMPS_LIBS+="/usr/lib/libdmumps.so," + # MUMPS_LIBS+="/usr/lib/libsmumps.so," + # MUMPS_LIBS+="/usr/lib/libzmumps.so," + # MUMPS_LIBS+="/usr/lib/libmumps_common.so," + # MUMPS_LIBS+="/usr/lib/libpord.so]" + # CONFOPTS+=" --with-mumps-lib=${MUMPS_LIBS}" + # CONFOPTS+=" --with-mumps-include=/usr/include" + # CONFOPTS+=" --with-mumps-dir=/usr/" +fi + +# NetCDF +if [ -f "$(whereis -b libnetcdf.so | cut -d' ' -f2)" ]; then + CONFOPTS+=" --with-netcdf=1" + CONFOPTS+=" --with-netcdf-pkg-config=" + CONFOPTS+="$(dirname $(pkgconf --path netcdf))" +fi + +# PNG +if [ -f "$(whereis -b libpng.so | cut -d' ' -f2)" ]; then + CONFOPTS+=" --with-png=1" + CONFOPTS+=" --with-png-pkg-config=" + CONFOPTS+="$(dirname $(pkgconf --path libpng))" +fi + +# PNetCDF +if [ -f "$(whereis -b libpnetcdf.so | cut -d' ' -f2)" ]; then + CONFOPTS+=" --with-pnetcdf=1" + CONFOPTS+=" --with-pnetcdf-pkg-config=" + CONFOPTS+="$(dirname $(pkgconf --path pnetcdf))" +fi + +# OpenBLAS: Linear algebra libraries +OPENBLAS_SO="$(whereis -b libblas.so | cut -d' ' -f2)" +if [ -f "${OPENBLAS_SO}" ]; then + CONFOPTS+=" --with-openblas=1" + # CONFOPTS+=" --with-openblas-lib=[-lopenblas,-lm,-lpthread,-lgfortran,-lm,-lpthread,-lgfortran]" + # CONFOPTS+=" --with-openblas-include=/usr/include" + CONFOPTS+=" --with-openblas-pkg-config=" + CONFOPTS+="$(dirname $(pkgconf --path openblas))" + # CONFOPTS+=" --download-openblas=0" + CONFOPTS+=" --download-f2cblaslapack=0" +fi + +# OpenCL: GPU computing +# Check header files +# (from opencl-headers package; how to do this in a consistent way?) +OPENCL_INC="/usr/include/CL/cl.h" +# Check library (find libOpenCL.so) +OPENCL_SO="$(whereis -b libOpenCL.so | cut -d' ' -f2)" +if [ -f "${OPENCL_SO}" ] && [ -f "${OPENCL_INC}" ]; then + CONFOPTS+=" --with-opencl=1" +fi + +# # OpenGL (mesa) +# # echo /lib64/libOpenGL.so /lib64/libGLX.so /lib64/libGLU.so +# # FindOpenGL found both a legacy GL library: +# # +# # OPENGL_gl_LIBRARY: /lib64/libGL.so +# # +# # and GLVND libraries for OpenGL and GLX: +# # +# # OPENGL_opengl_LIBRARY: /lib64/libOpenGL.so +# # OPENGL_glx_LIBRARY: /lib64/libGLX.so +# OPENGLIB="$(whereis -b libOpenGL.so | cut -d' ' -f2)" +# if [ -f "${OPENGLIB}" ]; then +# # OPENGLIB+=",$(whereis -b libGL | cut -d' ' -f2)," +# # OPENGLIB+=",$(whereis -b libGLX | cut -d' ' -f2)" +# # OPENGLIB+=",$(whereis -b libGLX | cut -d' ' -f2)" +# # # OPENGLIB+="$(pacman -Ql mesa | awk '/\.so$/{print $NF}' | tr ' \n' ',')" +# # CONFOPTS+=" --with-opengl=1" +# # CONFOPTS+=" --with-opengl-lib=[${OPENGLIB}]" +# # CONFOPTS+=" --with-opengl-include=[/usr/include/GL/glew.h]" +# CONFOPTS+=" --with-opengl=1" +# CONFOPTS+=" --with-opengl-pkg-config=" +# CONFOPTS+="$(dirname $(pkgconf --path opengl))" +# # CONFOPTS+="$(pacman -Ql mesa | awk '/\/include\/[^/]*\/$/{print $NF}' | tr ' \n' ',')]" +# fi + +# OpenMP: 64 bits blas and lapack, multi-threaded +if [ -f "$(whereis -b libomp.so | cut -d' ' -f2)" ]; then + CONFOPTS+=" --with-openmp=1" +fi + +# # OpenMPI (dependency; should be found by pacman) +# MPILIBDIR=$(dirname "$(pacman -Qlq openmpi | grep 'libmpi.so$')") +# MPIINC="$(pacman -Qlq openmpi | grep 'mpi.h$')" +# if [ -d "${MPILIBDIR}" ]; then +# CONFOPTS+=" --with-mpi=1" +# CONFOPTS+=" --with-mpi-dir=/usr/" +# fi + +# Scalapack: Parallel memory linear algebra +if [ -f "$(whereis -b libscalapack.so | cut -d' ' -f2)" ]; then + CONFOPTS+=" --with-scalapack=1" +fi + +# Scotch: Partitioning with sparse matrices +# TODO: programatic way +SCOTCH_DIR="/usr/include/scotch" +if [ -d "${SCOTCH_DIR}" ]; then + # SCOTCH_LIBS="$(ldconfig -p | awk '/scotch/{printf("'"${SCOTCH_DIR}"'/%s,", $1)}')" + SCOTCH_LIBS="libesmumps.so,libptscotch.so,libptscotcherr.so,libscotch.so,libscotcherr.so" + + # Include bzip2 if scotch was built with bzip2 support + if [ -f "$(whereis -b libbz2.so | cut -d' ' -f2)" ]; then + SCOTCH_LIBS+=",${SCOTCH_DIR}/libbz2.so" + fi + # Add [], remove trailing , + SCOTCH_LIBS="[${SCOTCH_LIBS}]" + CONFOPTS+=" --with-ptscotch=1" + CONFOPTS+=" --with-ptscotch-lib=${SCOTCH_LIBS}" + CONFOPTS+=" --with-ptscotch-include=${SCOTCH_DIR}" +fi + +# SuiteSparse: Sparse matrix library +if [ -f "$(whereis -b libsuitesparseconfig.so | cut -d' ' -f2)" ]; then + CONFOPTS+=" --with-suitesparse=1" +fi + +# SuperLU: Subroutines for sparsse linear systems +# TODO: programatic way +SUPERLU_DIR="/usr/include/superlu" +if [ -d "${SUPERLU_DIR}" ]; then + CONFOPTS+=" --with-superlu=1 --with-superlu-lib=-lsuperlu --with-superlu-include=${SUPERLU_DIR}" +fi + +# YAML: configuration files +# Check library (find libyaml.so) +OPENCL_SO="$(whereis -b libyaml.so | cut -d' ' -f2)" +if [ -f "${OPENCL_SO}" ]; then + CONFOPTS+=" --with-yaml=1" +fi + +# X: to enable ksp_xmonitor +LIBX11="$(whereis -b libX11.so | cut -d' ' -f2)" +LIBX11_DIR="$(dirname ${LIBX11})" +if [ -f "${LIBX11}" ]; then + LIBX11_INC="--keep-system-cflags --cflags-only-I"; + LIBX11_INC="$(pkgconf ${LIBX11_INC} x11)"; + CONFOPTS+=" --with-x-lib=[${LIBX11_DIR}/"; + # As per X11.pc, it seems that xcb.so is needed + CONFOPTS+="libX11-xcb.so,${LIBX11}]" + CONFOPTS+=" --with-x-include=${LIBX11_INC//-I/}" +fi + +# ZLIB +if [ -f "$(whereis -b libzlib.so | cut -d' ' -f2)" ]; then + CONFOPTS+=" --with-zlib=1" + CONFOPTS+=" --with-zlib-pkg-config=" + CONFOPTS+="$(dirname $(pkgconf --path zlib))" +fi + +# # trilinos support +# +# if [ "${TRILINOS_DIR}" ]; then +# CONFOPTS+=" --with-ml-dir=${TRILINOS_DIR}" +# # boost support (may be useful for trilinos) +# CONFOPTS+=" --with-boost=1" +# fi + +# Incompatible with complex +# # sundials support +# SUNDIALS_DIR="/usr/include/sundials/" +# if [ -d "${SUNDIALS_DIR}" ]; then +# CONFOPTS+=" --with-sundials=1 --with-sundials-include=${SUNDIALS_DIR}" +# fi + +# # pastix support (non-free) +# PASTIX_CONF=$(which pastix-conf) +# if [ -f "${PASTIX_CONF}" ]; then +# PASTIX_DIR="$($PASTIX_CONF --incs | sed 's/-I//')" +# if [ ! -d ${PASTIX_DIR} ]; then +# PASTIX_DIR="[]" +# fi +# #PASTIX_LIBS="$($PASTIX_CONF --libs)" +# PASTIX_LIBS="[libpastix.a,librt.so,libhwloc.so,libpthread.a]" +# CONFOPTS+=" --with-pastix=1 --with-pastix-lib=${PASTIX_LIBS} --with-pastix-include=${PASTIX_DIR}" +# fi + +echo "${CONFOPTS}" |