diff options
Diffstat (limited to 'transabyss.install')
-rw-r--r-- | transabyss.install | 35 |
1 files changed, 35 insertions, 0 deletions
diff --git a/transabyss.install b/transabyss.install new file mode 100644 index 000000000000..d65d553051b1 --- /dev/null +++ b/transabyss.install @@ -0,0 +1,35 @@ +post_install() { cat << EOF + +Configuration +------------- + +Configuration files are saved in: + + /etc/transabyss + +You will most likely want to edit the genomes section transcriptome.cfg to point +to the location of your genomes. + +Preparing Genomes +----------------- + +The genomes are usually created by downloading a reference genome, +e.g. [hg19][1], and running gmap_build, see [gmap README][2]: + + gmap_build -g -d hg19 -D /path/to/genomes chr22.fa.gz + +[1]: ftp://hgdownload.cse.ucsc.edu/goldenPath/hg19/chromosomes/ +[2]: http://research-pub.gene.com/gmap/src/README + +Getting Started +--------------- + +transabyss installs an /etc/profile.d/transabyss.sh script that you either need +to source right now or restart your shell session. + +EOF +} + +post_upgrade() { + post_install +} |