diff options
Diffstat (limited to 'wiggletools-flags.patch')
| -rw-r--r-- | wiggletools-flags.patch | 28 |
1 files changed, 11 insertions, 17 deletions
diff --git a/wiggletools-flags.patch b/wiggletools-flags.patch index e17029fb9b6f..d56c62204410 100644 --- a/wiggletools-flags.patch +++ b/wiggletools-flags.patch @@ -1,24 +1,18 @@ ---- a/src/Makefile 2020-08-13 10:25:02.781495451 -0400 -+++ b/src/Makefile 2020-08-13 10:29:03.068773044 -0400 -@@ -1,9 +1,10 @@ +--- a/src/Makefile 2021-01-04 20:25:57.361048840 -0500 ++++ b/src/Makefile 2021-01-04 20:27:57.596453700 -0500 +@@ -1,4 +1,5 @@ -CFLAGS=-g -Wall -O3 -std=gnu99 +CFLAGS+=-g -Wall -O3 -std=gnu99 +LDFLAGS+= LIBDIR=../lib BINDIR=../bin - INC=-I../../libBigWig -I../../htslib - LIB_PATHS=-L${LIBDIR} -L../../libBigWig -L../../htslib --LIBS= -lwiggletools -l:libBigWig.a -lcurl -l:libhts.a -lgsl -lgslcblas -lz -lpthread -lm -llzma -lbz2 -+LIBS= -lwiggletools -lBigWig -lcurl -lhts -lgsl -lgslcblas -lz -lpthread -lm -llzma -lbz2 - OPTS=-D_PBGZF_USE + LIBS= -lwiggletools -lBigWig -lcurl -lhts -lgsl -lgslcblas -lz -lpthread -lm -llzma -lbz2 +@@ -18,7 +19,7 @@ + mkdir -p ${LIBDIR} + ar rcs ${LIBDIR}/libwiggletools.a *.o - default: lib bin -@@ -12,7 +13,7 @@ - - ${BINDIR}/wiggletools: ${LIBDIR}/libwiggletools.a wiggletools.o - mkdir -p ${BINDIR} -- ${CC} ${CFLAGS} ${LIB_PATHS} wiggletools.c ${LIBS} -o ${BINDIR}/wiggletools -+ ${CC} ${CFLAGS} ${LDFLAGS} ${LIB_PATHS} wiggletools.c ${LIBS} -o ${BINDIR}/wiggletools - - lib: ${LIBDIR}/libwiggletools.a +-%.o: %.c; ${CC} ${CFLAGS} ${INC} ${OPTS} -c $< -o $@ ++%.o: %.c; ${CC} ${CFLAGS} ${LDFLAGS} ${INC} ${OPTS} -c $< -o $@ + clean: + rm -Rf *.o *.a wiggletools |