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-rw-r--r--wiggletools-flags.patch20
1 files changed, 20 insertions, 0 deletions
diff --git a/wiggletools-flags.patch b/wiggletools-flags.patch
new file mode 100644
index 000000000000..91c41594346c
--- /dev/null
+++ b/wiggletools-flags.patch
@@ -0,0 +1,20 @@
+diff -Naur WiggleTools-1.2.3.orig/src/Makefile WiggleTools-1.2.3/src/Makefile
+--- WiggleTools-1.2.3.orig/src/Makefile 2019-07-11 11:05:35.437719184 -0400
++++ WiggleTools-1.2.3/src/Makefile 2019-07-11 11:12:48.112989668 -0400
+@@ -1,5 +1,6 @@
+ CC=/bin/cc
+-CFLAGS=-g -Wall -O3 -std=gnu99
++CFLAGS+=-g -Wall -O3 -std=gnu99
++LDFLAGS+=
+ LIBDIR=../lib
+ BINDIR=../bin
+ INC=-I../../libBigWig -I../../htslib
+@@ -13,7 +14,7 @@
+
+ ${BINDIR}/wiggletools: ${LIBDIR}/libwiggletools.a wiggletools.o
+ mkdir -p ${BINDIR}
+- ${CC} ${CFLAGS} ${LIB_PATHS} wiggletools.c ${LIBS} -o ${BINDIR}/wiggletools
++ ${CC} ${CFLAGS} ${LDFLAGS} ${LIB_PATHS} wiggletools.c ${LIBS} -o ${BINDIR}/wiggletools
+
+ lib: ${LIBDIR}/libwiggletools.a
+