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2021-12-16Fix incorrect url for iconRhinoceros
* Previous was the html page
2021-12-16Fix bad checksumRhinoceros
* No need to update pkgver if it didn't install previously
2021-12-15Update to 2.11.6-1Rhinoceros
* Upstream changelog: * By default, the port listener is disabled on IGV startup. Change the setting in View > Preferences > Advanced. Note that to use oAuth for Google or Amazon AWS access you must enable the port. * Update to use Log4j version 2.16.0. Note however, we do not believe any version of IGV is impacted by the vulnerability of earlier Log4j versions because IGV is a desktop application and does not expose any input forms to users over the web, and it does not log any user input. * Main download no longer bundles icon, so explicitly download from GitHub repository * Remove commented png that was unused * Fix whitespace indentations for consistency
2021-11-23Update to 2.11.4Rhinoceros
* Upstream changelog: * Ignore "f" and "b" keys if no tracks are selected, do not popup dialog.
2021-11-06Update to 2.11.3Rhinoceros
* Upstream changelog: * Bind "f" and "b" keystrokes to next feature and previous feature, in addition to "ctrl-f" and "ctrl-b". Also "shift-f" and "shift-b" to next/prev exon, in addition to "ctrl-shift-f/b". Fixes #1046
2021-10-08Update to 2.11.2-1Rhinoceros
* Upstream changelog: "Taking scrolling into account when exporting images. Fixes #1033"
2021-09-11Update to 2.11.1-1Rhinoceros
* Upstream changelog: "v2.11.1: Bug fix -- preference overrides from batch script were being stored persistently"
2021-08-25Update to 2.11.0-1Rhinoceros
* Upstream changelog: "Changed to use sha512 for signing Windows installers"
2021-08-02Update to .SRCINFO to 2.10.3-1Rhinoceros
2021-07-15Update to 2.10.2-1Rhinoceros
* Upstream changelog: This bug fix release includes the following improvements: Fixed a problem with displaying extra large chromosomes (1024^3 bp). (Git issue #977 - initial issue) Fixed a problem with loading BAM files that do not store read sequence. (Git issue #977 - part 2) Tracks generated via Tools > Find Motif are now correctly saved in sessions. (Git issue #988) Fixed a problem in alignment tracks that caused the right-click popup menu command Copy read details to the clipboard to fail. Fixed a problem that sometimes occurred when reloading tracks (via File > Reload Tracks) if using a local reference genome.
2021-07-13Update to 2.10.1-1Rhinoceros
Upstream changelog: > v2.10.1: Use full height of track to render features in "COLLAPSED" mode. Fixes #990
2021-06-04Update to 2.10.0Rhinoceros
* Upstream changelog: * v2.10.0: remove unused code * fix module definition
2021-02-11Update to 2.9.1-1Rhinoceros
* Upstream changelog: "blat refresh fix"
2021-02-02Update to 2.9.0-1Rhinoceros
* Upstream changelog: "color unit test"
2020-11-25Update to 2.8.13-1Rhinoceros
* Upstream changelog: Fixed Windows installer The NSIS build was failing during compression. This removes the directive to compress the entire installer as a single block but instead go file-by-file. The installer size is slightly larger but it completes this way.
2020-11-07Update to 2.8.12-1Rhinoceros
* Upstream changelog: "remove diagnostic print" [?]
2020-10-29Update to 2.8.11:Rhinoceros
* Upstream changelog: This release includes new download bundles for IGV. For the MacOS App and the Windows Installer, you can now choose to download a version with or without an embedded Java. If you prefer to use your own installation of Java 11, choose an IGV download that is labeled "Separate Java 11 required".
2020-10-09Update to 2.8.10Rhinoceros
* Upstream changelog: 'This release includes new download bundles for IGV. For the MacOS App and the Windows Installer, you can now choose to download a version with or without an embedded Java. If you prefer to use your own installation of Java 11, download a version labeled "Separate Java 11 required".' * Update source link and change to https * Licence also changed; give file unique name
2020-08-04Update to 2.8.9-1Rhinoceros
* Upstream changelog: "more precise alignment width calculation (round vs floor)"
2020-08-01Update to 2.8.8-1Rhinoceros
* Upstream changelog: "Re-release with updated JRE (11.0.8)"
2020-07-21Update to 2.8.7-1Rhinoceros
* Upstream changelog: "Adjust VCF visibility window computation"
2020-06-28Update to 2.8.6-1Rhinoceros
* Upstream changelog: "Remove use of Swing file chooser (use AWT native)"
2020-06-20Update to 2.8.5-1Rhinoceros
* Upstream changelog: change default popup text option to "click" from "hover"
2020-06-17Update to 2.8.4-1Rhinoceros
* Upstream changelog: * Clean up sort command * Off-by-one errors
2020-06-04Update to 2.8.3-1Rhinoceros
* Upstream changelog: "Protect against loading alignments > viz window. See #804"
2020-03-24Update to 2.8.2-1Rhinoceros
* Upstream changelog: "Fix problems with reload session"
2020-01-07Update to 2.8.0-1Rhinoceros
* Upstream changelog: "oAuth init error messages"
2019-10-22Update to 2.7.2-1Rhinoceros
* Upstream changelog: Fix line plot error (see #715)
2019-10-17Update to 2.7.1-1Rhinoceros
* Upstream changelog: "remove unused code"
2019-10-08Update to 2.7.0Rhinoceros
* Upstream changelog: catch error when removing provisioning URL (don't try to load "")
2019-08-27Update to 2.6.3-1Rhinoceros
* Upsteam changelog: "update server data"
2019-08-03Update to 2.6.2-1Rhinoceros
* Upstream changelog: 'fix "exists" test'
2019-07-26Update to 2.6.1-1Rhinoceros
* Upstream changelog: "draw bedpe arcs between absolute center of features, don't round down to an int"
2019-07-15Update to 2.6.0Rhinoceros
* Upstream changelog: "v2.6.0: Increase max cigar length for popup info from 60 to 1000. See issue #667." * Fix dependencies to JRE v11 * Fix hard-coded URL
2019-05-30Update to 2.5.3-1Rhinoceros
* Upstream changelog: "base64 encode proxy password field"
2019-04-24Update to 2.5.2-1Rhinoceros
* Upstream changelog: "Fixed issue with loading indexed files from AWS signed URLs." * Fixed licence
2019-04-22forgot to generate srcinfoPiotr Balwierz
2018-07-04adopted and added exectution via archlinux-java-runPiotr Balwierz
2018-07-03updatehaawda
2018-05-22updatehaawda
2018-03-07updatehaawda
2018-01-10updatehaawda
2017-12-15Updatehaawda
2017-11-09updatehaawda
2017-10-22needs java>=8haawda
2017-10-21updatehaawda
2017-09-25updatehaawda
2017-09-07Updatehaawda
2017-08-10updatehaawda
2017-07-25Updatehaawda