pkgbase = tophat
	pkgdesc = fast splice junction mapper for RNA-Seq reads
	pkgver = 2.1.0
	pkgrel = 2
	url = http://ccb.jhu.edu/software/tophat/index.shtml
	arch = x86_64
	arch = i686
	license = custom
	makedepends = boost
	depends = boost-libs
	depends = bowtie2
	depends = python2
	source = http://ccb.jhu.edu/software/tophat/downloads/tophat-2.1.0.tar.gz
	source = https://github.com/seqan/seqan/archive/seqan-v1.4.2.tar.gz
	source = fix_build_w_seqan1.4.patch
	md5sums = 1ace6e96fa692af6ed885bad5fe7c4d7
	md5sums = 7b0080b01feeb223e054dabef53d6fc5
	md5sums = 93d47e54408b7b5eb4132d65f5dd5085

pkgname = tophat