From 78c55ffd7640432e2cdf4da40b1eb4b6338ba39c Mon Sep 17 00:00:00 2001
From: a821 <a821@nospam.mail.de>
Date: Wed, 27 Mar 2024 09:44:40 +0100
Subject: [PATCH 1/2] fix cytoscape.vmoptions file location

cytoscape tries to write this file in a write protected directory.
therefore move this file inside $HOME/CytoscapeConfiguration
---
 cytoscape.sh     | 2 +-
 gen_vmoptions.sh | 2 +-
 2 files changed, 2 insertions(+), 2 deletions(-)

diff --git a/cytoscape.sh b/cytoscape.sh
index 1d3d196..ae3ce0c 100755
--- a/cytoscape.sh
+++ b/cytoscape.sh
@@ -58,7 +58,7 @@ else
 fi
 
 #vm_options_path=$HOME/.cytoscape
-vm_options_path=$script_path
+vm_options_path="${HOME}/CytoscapeConfiguration"
 
 # Attempt to generate Cytoscape.vmoptions if it doesn't exist!
 if [ ! -e "$vm_options_path/Cytoscape.vmoptions"  -a  -x "$script_path/gen_vmoptions.sh" ]; then
diff --git a/gen_vmoptions.sh b/gen_vmoptions.sh
index b9b0934..3ae36ab 100755
--- a/gen_vmoptions.sh
+++ b/gen_vmoptions.sh
@@ -4,7 +4,7 @@
 script_path="$(dirname -- $0)"
 
 #vm_options_path="$HOME/.cytoscape"
-vm_options_path=$script_path
+vm_options_path="${HOME}/CytoscapeConfiguration"
 
 if [ ! -e $vm_options_path ]; then
     /bin/mkdir $vm_options_path
-- 
2.44.0