# Maintainer: PolpOnline <aur at t0mmy dot anonaddy dot com>
# Contributor:  Eric Biggers <ebiggers3 at gmail dot com>

pkgname=abyss
pkgver=2.2.5
pkgrel=1
pkgdesc="Assembly By Short Sequences - a de novo, parallel, paired-end sequence assembler"
arch=("i686" "x86_64")
url="http://www.bcgsc.ca/platform/bioinfo/software/abyss"
license=("GPL3")
depends=("make" "openmpi" "sqlite")
makedepends=("boost" "sparsehash")
source=("$pkgname-$pkgver.tar.gz::https://github.com/bcgsc/abyss/archive/v$pkgver.tar.gz")
sha256sums=('38e886f455074c76b32dd549e94cc345f46cb1d33ab11ad3e8e1f5214fc65521')

build() {
  cd "${pkgname}-${pkgver}"

  LDFLAGS="${LDFLAGS:-} -L/usr/lib/openmpi" \
	  ./configure --prefix=/usr --disable-werror
  make 
}

check() {
  cd "${pkgname}-${pkgver}"

  make check
}

package() {
  cd "${pkgname}-${pkgver}"

  make DESTDIR="${pkgdir}" install
}