# Maintainer: András Wacha <awacha@gmail.com>
pkgname=atsas
pkgver=3.0.4
pkgrel=1
pkgdesc="A program suite for small-angle scattering data analysis from biological macromolecules"
arch=('x86_64')
url="https://www.embl-hamburg.de/biosaxs/software.html"
license=('custom')
options=('!strip')
depends=( 'libgfortran.so=5' )

# !!! You have to download the sources yourself from https://www.embl-hamburg.de/biosaxs/download.html
# !!! Use the Ubuntu-20.04 version!

source=('local://ATSAS-3.0.4-2_amd64.tar.gz' 'license.md' 'atsas.sh')
sha512sums=('aa82405268efb3f948609d930aac8a43be9c138e25e892b672054cf7cf010be4ed3f10f158c4bc418084f690a261758d9aa32e395d72638d822533a348b430e7'
            '3f728fb538b236f0ddce8a7c86303d14c529da4f117eb5f4c87ef5f0fef52dea3ae7650fc439316c08628dc641893ab10f85890577fcb8e67b9398fdbbfa773f'
            'd5cf2dd6ee92a6ce9d01cfd5a2a87f081b4ecceecc7839f78c80d5c9a48c81b44f308e185b98e8d844bad8084d0d4946e4a117989a7b36e14db0d577013aecde')


package() {
#	set > environment.txt
	mkdir -p "${pkgdir}/opt"
	cp -R "${srcdir}/ATSAS-3.0.4-2" "${pkgdir}/opt/atsas"
	ATSAS_ROOT=/opt/atsas
#	DEST_BIN_DIR=/opt/atsas/bin
#	GCC7_LIBDIR=$(ls -d /usr/lib/gcc/${CHOST}/7.*)
#	echo "GCC7 libdir: ${GCC7_LIBDIR}"
#	mkdir -p "${pkgdir}/${DEST_BIN_DIR}"
#	mkdir -p "${pkgdir}${ATSAS_ROOT}/libexec"
#	for f in ${pkgdir}${ATSAS_ROOT}/bin/*; do
#		mv $f ${pkgdir}${ATSAS_ROOT}/libexec
#		f=$(basename $f)
#		cat >${pkgdir}${DEST_BIN_DIR}/$f <<EOF
##!/bin/sh
#export ATSAS=${ATSAS_ROOT} 
#export LD_LIBRARY_PATH=${ATSAS_ROOT}/lib/atsas:${GCC7_LIBDIR}
#${ATSAS_ROOT}/libexec/$f \$*
#EOF
#		chmod +x ${pkgdir}${DEST_BIN_DIR}/$f
#	done
	mkdir -p "${pkgdir}/usr/share/licenses/${pkgname}"
	cp "${srcdir}/license.md" "${pkgdir}/usr/share/licenses/${pkgname}"
	mkdir -p "${pkgdir}/etc/profile.d"
	cp "${srcdir}/atsas.sh" "${pkgdir}/etc/profile.d/atsas.sh"
	chmod +x "${pkgdir}/etc/profile.d/atsas.sh"
 	mv ${pkgdir}/opt/atsas/share/applications ${pkgdir}/usr/share
 	mv ${pkgdir}/opt/atsas/share/icons ${pkgdir}/usr/share
 	mv ${pkgdir}/opt/atsas/share/mime ${pkgdir}/usr/share
}