# Maintainer: Charles Vejnar <first name [dot] last name [at] gmail [dot] com> # Contributor: Grey Christoforo <first name [at] last name [dot] net> pkgname=bowtie2 pkgver=2.5.4 pkgrel=1 pkgdesc="Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequence." arch=("x86_64") url="https://bowtie-bio.sourceforge.net/bowtie2" license=("GPL3") depends=('zstd') source=("$pkgname-$pkgver.tar.gz::https://github.com/BenLangmead/bowtie2/archive/v${pkgver}.tar.gz") sha256sums=('841a6a60111b690c11d1e123cb5c11560b4cd1502b5cee7e394fd50f83e74e13') prepare() { cd "${srcdir}/${pkgname}-${pkgver}" make clean } build() { cd "${srcdir}/${pkgname}-${pkgver}" make PREFIX=/usr WITH_ZSTD=1 } package() { cd "${srcdir}/${pkgname}-${pkgver}" make PREFIX=/usr DESTDIR="${pkgdir}" install install -dm755 "${pkgdir}/usr/share/doc/${pkgname}" cp -a "${srcdir}/bowtie2-${pkgver}/doc" "${pkgdir}/usr/share/doc/${pkgname}" }