# Maintainer: Bipin Kumar <bipin@ccmb.res.in>
# shellcheck disable=2034
# shellcheck disable=2148

pkgname=diamond
pkgver=2.1.3
pkgrel=1
pkgdesc="High performance sequence aligner for protein and translated DNA searches with big sequence data. https://doi.org/10.1038/s41592-021-01101-x"
arch=('x86_64')
url="https://github.com/bbuchfink/diamond"
license=('GPL3')
depends=('gcc-libs' 'zlib' 'zstd' 'blast+')
makedepends=('cmake')
source=("$pkgname-$pkgver.tar.gz::https://github.com/bbuchfink/diamond/archive/v$pkgver.tar.gz")
sha256sums=('6c5504d33e9c88314d9033c3b5e083a572ac550372f70afdae5c56213e2bea85')

build() {
  cd $pkgname-$pkgver
  cmake -B build \
    -DCMAKE_INSTALL_PREFIX=/usr \
    -DCMAKE_BUILD_TYPE=Release \
    -DWITH_ZSTD=ON \
    -DBLAST_INCLUDE_DIR=/usr/include/ncbi-tools++ \
    -DBLAST_LIBRARY_DIR=/usr/lib/ \
    -DZSTD_LIBRARY=/usr/lib/libzstd.so \
    -DZLIB_INCLUDE_DIR=/usr/include \
    -Wno-dev

  cmake --build build
}

package() {
  cd $pkgname-$pkgver
  DESTDIR="$pkgdir" cmake --install build
}