# Maintainer: Guoyi Zhang _pkgname=bambu _pkgver=3.4.0 pkgname=r-${_pkgname,,} pkgver=3.4.0 pkgrel=1 pkgdesc='Reference-guided isoform reconstruction and quantification for long read RNA-Seq data' arch=('x86_64') url="https://bioconductor.org/packages/${_pkgname}" license=('GPL') depends=( r r-biocgenerics r-biocparallel r-data.table r-dplyr r-genomeinfodb r-genomicalignments r-genomicfeatures r-genomicranges r-iranges r-rcpp r-rcpparmadillo r-rsamtools r-s4vectors r-summarizedexperiment r-tidyr r-xgboost r-bsgenome ) optdepends=( r-annotationdbi r-apeglm r-biocfilecache r-biostrings r-bsgenome.hsapiens.ncbi.grch38 r-circlize r-complexheatmap r-deseq2 r-dexseq r-experimenthub r-ggbio r-ggplot2 r-gridextra r-knitr r-nanoporernaseq r-parallel r-purrr r-rmarkdown r-testthat r-txdb.hsapiens.ucsc.hg38.knowngene r-utils ) source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") sha256sums=('d17030e8bb4eab2d9571a0128460582b18b5ac1ac64f0f80279d7227d152ec0a') build() { R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" } package() { install -dm0755 "${pkgdir}/usr/lib/R/library" cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" } # vim:set ts=2 sw=2 et: