# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com> # Contributor: Guoyi Zhang <guoyizhang at malacology dot net> _pkgname=biodbHmdb _pkgver=1.12.0 pkgname=r-${_pkgname,,} pkgver=${_pkgver//-/.} pkgrel=1 pkgdesc="a library for connecting to the HMDB Database" arch=(x86_64) url="https://bioconductor.org/packages/$_pkgname" license=('AGPL-3.0-only') depends=( r-biodb r-r6 r-rcpp r-zip ) makedepends=( r-testthat ) checkdepends=( r-xml2 ) optdepends=( r-biocstyle r-covr r-devtools r-knitr r-lgr r-rmarkdown r-roxygen2 r-testthat ) source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") md5sums=('0333d0ac49b6de03426e7709fa2ca1ac') b2sums=('e78c2a009f2538957d661dacf408dd9c42844768def6bc24f62e8cbb0b11e056f9154af6a1fab50f2402e60dac9f48fb9d203fbf0ec9d978eefc50c021cc69be') build() { mkdir build R CMD INSTALL -l build "$_pkgname" } check() { cd "$_pkgname/tests" R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R } package() { install -d "$pkgdir/usr/lib/R/library" cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library" }