# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>

_pkgname=clustifyr
_pkgver=1.12.0
pkgname=r-${_pkgname,,}
pkgver=1.12.0
pkgrel=1
pkgdesc='Classifier for Single-cell RNA-seq Using Cell Clusters'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('MIT')
depends=(
  r
  r-cowplot
  r-dplyr
  r-entropy
  r-fgsea
  r-ggplot2
  r-httr
  r-matrixstats
  r-proxy
  r-readr
  r-rlang
  r-s4vectors
  r-scales
  r-singlecellexperiment
  r-stringr
  r-summarizedexperiment
  r-tibble
  r-tidyr
)
optdepends=(
  r-biocmanager
  r-biocstyle
  r-complexheatmap
  r-covr
  r-ggrepel
  r-gprofiler2
  r-knitr
  r-purrr
  r-remotes
  r-rmarkdown
  r-seurat
  r-shiny
  r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('65e7189f5966d811d76bdcf9e2c215302acadb6354eb45e4e568abbeebd1cf44')

build() {
  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}

package() {
  install -dm0755 "${pkgdir}/usr/lib/R/library"
  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
  install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
}
# vim:set ts=2 sw=2 et: