# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>

_pkgname=CODEX
_pkgver=1.36.0
pkgname=r-${_pkgname,,}
pkgver=1.36.0
pkgrel=1
pkgdesc='A Normalization and Copy Number Variation Detection Method for Whole Exome Sequencing'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('GPL')
depends=(
  r
  r-biostrings
  r-bsgenome.hsapiens.ucsc.hg19
  r-genomeinfodb
  r-iranges
  r-rsamtools
  r-s4vectors
)
optdepends=(
  r-wes.1kg.wugsc
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('5f35ce48e2535a2299e2f9d17fffe5d336f1491f17bad3c8a70c9310313c6d5c')

build() {
  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}

package() {
  install -dm0755 "${pkgdir}/usr/lib/R/library"
  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et: