# system requirements: C++11, GNU make
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>

_pkgname=csaw
_pkgver=1.30.1
pkgname=r-${_pkgname,,}
pkgver=1.30.1
pkgrel=3
pkgdesc='ChIP-Seq Analysis with Windows'
arch=('x86_64')
url="https://bioconductor.org/packages/${_pkgname}"
license=('GPL')
depends=(
  r
  r-biocgenerics
  r-biocparallel
  r-edger
  r-genomeinfodb
  r-genomicranges
  r-iranges
  r-limma
  r-metapod
  r-rcpp
  r-rhtslib
  r-rsamtools
  r-s4vectors
  r-summarizedexperiment
  r-zlibbioc
  gcc
  make
)
optdepends=(
  r-annotationdbi
  r-biocmanager
  r-biocstyle
  r-genomicalignments
  r-genomicfeatures
  r-knitr
  r-org.mm.eg.db
  r-rmarkdown
  r-testthat
  r-txdb.mmusculus.ucsc.mm10.knowngene
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('a38512cc4db8865a70623d60db29e4d4f05c476c6a0de776110cbc50c4cbde89')

build() {
  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}

package() {
  install -dm0755 "${pkgdir}/usr/lib/R/library"
  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et: