# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>

_pkgname=DEGreport
_pkgver=1.34.0
pkgname=r-${_pkgname,,}
pkgver=1.34.0
pkgrel=1
pkgdesc='Report of DEG analysis'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('MIT')
depends=(
  r
  r-biobase
  r-biocgenerics
  r-broom
  r-circlize
  r-complexheatmap
  r-consensusclusterplus
  r-cowplot
  r-deseq2
  r-dplyr
  r-edger
  r-ggdendro
  r-ggplot2
  r-ggrepel
  r-knitr
  r-lasso2
  r-logging
  r-magrittr
  r-nozzle.r1
  r-psych
  r-rcolorbrewer
  r-reshape
  r-rlang
  r-s4vectors
  r-scales
  r-stringr
  r-summarizedexperiment
  r-tibble
  r-tidyr
)
optdepends=(
  r-annotationdbi
  r-biocstyle
  r-limma
  r-pheatmap
  r-rmarkdown
  r-statmod
  r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('cce02adbd1087718a0a00b55399b5401e7ab1ca8428a1ef7bd3a591b5583e544')

build() {
  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}

package() {
  install -dm0755 "${pkgdir}/usr/lib/R/library"
  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
  install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
}
# vim:set ts=2 sw=2 et: