# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>

_pkgname=dupRadar
_pkgver=1.34.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Assessment of duplication rates in RNA-Seq datasets"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-3.0-only')
depends=(
  r-rsubread
)
optdepends=(
  r-annotationhub
  r-biocstyle
  r-knitr
  r-rmarkdown
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('596a3d14b6017c70240eb6516921a8b2')
b2sums=('24355e6aaffd27c81c5c9bc76c3a074cb4f02693de45cb1a8d412b903594c96f0b11a77820104402af7e6617d9374dedd983394e7bccfd98505ee13d68ba4306')

build() {
  mkdir build
  R CMD INSTALL -l build "$_pkgname"
}

package() {
  install -d "$pkgdir/usr/lib/R/library"
  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}