# system requirements: GNU make # Maintainer: Guoyi Zhang <guoyizhang at malacology dot net> _pkgname=epigraHMM _pkgver=1.16.0 pkgname=r-${_pkgname,,} pkgver=1.16.0 pkgrel=1 pkgdesc='Epigenomic R-based analysis with hidden Markov models' arch=('x86_64') url="https://bioconductor.org/packages/${_pkgname}" license=('MIT') depends=( r r-bamsignals r-csaw r-data.table r-genomeinfodb r-genomicranges r-ggplot2 r-ggpubr r-greylistchip r-iranges r-limma r-magrittr r-pheatmap r-rcpp r-rcpparmadillo r-rhdf5 r-rhdf5lib r-rsamtools r-rtracklayer r-s4vectors r-scales r-summarizedexperiment make ) optdepends=( r-biocstyle r-bsgenome.rnorvegicus.ucsc.rn4 r-chromstardata r-gcapc r-knitr r-rmarkdown r-testthat ) source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") sha256sums=('284a449f728dbe1d75b19ba78e5faff8ce2ca92cec9753e8e02ea1a52f50fe2c') build() { R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" } package() { install -dm0755 "${pkgdir}/usr/lib/R/library" cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}" } # vim:set ts=2 sw=2 et: