# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>

_pkgname=logicFS
_pkgver=2.24.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Identification of SNP Interactions"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('LGPL-2.0-or-later')
depends=(
  r-logicreg
  r-mcbiopi
)
optdepends=(
  r-genefilter
  r-siggenes
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('e7f8deac6ee614ef82472cb42466ac98')
b2sums=('e482bedb7b4c3f9281b79a78fb7e6f3bc6d0fe77472ffd5be0cbc4f98c5c2c78c00650ed818d0c4497794e3071e28e15f0098df2064dbdc76187d7b5ee7ae735')

build() {
  mkdir build
  R CMD INSTALL -l build "$_pkgname"
}

package() {
  install -d "$pkgdir/usr/lib/R/library"
  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}