# system requirements: HMMER3
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>

_pkgname=MethTargetedNGS
_pkgver=1.34.0
pkgname=r-${_pkgname,,}
pkgver=1.34.0
pkgrel=1
pkgdesc='Perform Methylation Analysis on Next Generation Sequencing Data'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('Artistic2.0')
depends=(
  r
  r-biostrings
  r-gplots
  r-seqinr
  r-stringr
  hmmer
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('8cef3643e99f5f79706f68d542e73be6a964649f7b382c66e9b8f08be3fd4817')

build() {
  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}

package() {
  install -dm0755 "${pkgdir}/usr/lib/R/library"
  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et: