# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>

_pkgname=msm
_pkgver=1.7.1
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=2
pkgdesc="Multi-State Markov and Hidden Markov Models in Continuous Time"
arch=(x86_64)
url="https://cran.r-project.org/package=$_pkgname"
license=('GPL-2.0-or-later')
depends=(
  blas
  lapack
  r-expm
  r-mvtnorm
)
optdepends=(
  r-covr
  r-doparallel
  r-flexsurv
  r-foreach
  r-minqa
  r-mstate
  r-numderiv
  r-testthat
)
source=("https://cran.r-project.org/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('8aa592740ac775876b23cb0eb28b36d6')
b2sums=('9b3096eabdb8585fa568d307fff8afc99d479030e5044d2f03a6fb6e7e7401408827f6420986ef988cf0446279b1ad19cdeaa4c689fe9f4433aadd7142e8b9fc')

build() {
  mkdir build
  R CMD INSTALL -l build "$_pkgname"
}

package() {
  install -d "$pkgdir/usr/lib/R/library"
  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}