# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>

_pkgname=RAREsim
_pkgver=1.6.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Simulation of Rare Variant Genetic Data"
arch=(any)
url="https://bioconductor.org/packages/${_pkgname}"
license=(GPL3)
depends=(
  r-nloptr
)
checkdepends=(
  r-testthat
)
optdepends=(
  r-biocstyle
  r-ggplot2
  r-knitr
  r-markdown
  r-rmarkdown
  r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('6ec5b86f348e2d4ffb365da80651041e')
sha256sums=('8fb2a823bf1b18ea70eb886ed8726c47896ac240156499e90943fd36f1de213f')

build() {
  mkdir -p build
  R CMD INSTALL "$_pkgname" -l build
}

check() {
  cd "$_pkgname/tests"
  R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}

package() {
  install -d "$pkgdir/usr/lib/R/library"
  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}