# Maintainer: peippo # Contributor: Viktor Drobot (aka dviktor) linux776 [at] gmail [dot] com # Contributor: Grey Christoforo _bcname=Rhtslib _bcver=2.4.0 pkgname=r-${_bcname,,} pkgdesc="HTSlib high-throughput sequencing library as an R package" url="https://bioconductor.org/packages/release/bioc/html/${_bcname}.html" license=("LGPL2.1") pkgver=${_bcver//[:-]/.} pkgrel=1 arch=("i686" "x86_64") depends=( "r" "r-zlibbioc" ) optdepends=( "r-knitr" "r-markdown" "r-biocstyle" ) makedepends=() source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_bcname}_${_bcver}.tar.gz") b2sums=('3ac23e12f2f5a59db9b15f7f1789c5b94683b92028a11c35f0215c7797ca0058e252cd3869074a908944a2e853e311f771cbbccb3d6fad5947fbc81aa72881b5') options=("!lto" "staticlibs") build() { R CMD INSTALL ${_bcname}_${_bcver}.tar.gz -l "${srcdir}" } package() { install -dm0755 "${pkgdir}/usr/lib/R/library" cp -a --no-preserve=ownership "${_bcname}" "${pkgdir}/usr/lib/R/library" if [[ -f "${_bcname}/LICENSE" ]]; then install -Dm0644 "${_bcname}/LICENSE" "${pkgdir}/usr/share/licenses/${pkgname}/LICENSE" fi }