# Contributor: Viktor Drobot (aka dviktor) linux776 [at] gmail [dot] com
# Contributor: Grey Christoforo <first name at last name dot net>

_bcname=Rhtslib
_bcver=1.26.0
pkgname=r-${_bcname,,}
pkgver=${_bcver//[:-]/.}
pkgrel=1
pkgdesc="HTSlib high-throughput sequencing library as an R package"
arch=(i686 x86_64)
url="https://bioconductor.org/packages/release/bioc/html/${_bcname}.html"
license=(LGPL2)
depends=(r r-zlibbioc bzip2 xz curl)
makedepends=(make)
optdepends=(r-knitr r-rmarkdown r-biocstyle)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_bcname}_${_bcver}.tar.gz")
sha256sums=('24bba61616e7d4fc57fda86172486b92ffcae31d1a7183d7b8ee29e324ff955f')
options=(staticlibs)

build() {
  R CMD INSTALL ${_bcname}_${_bcver}.tar.gz -l "${srcdir}"
}

package() {
  install -dm0755 "${pkgdir}/usr/lib/R/library"

  cp -a --no-preserve=ownership "${_bcname}" "${pkgdir}/usr/lib/R/library"
}