# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>

_pkgname=Rsubread
_pkgver=2.18.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Mapping, quantification and variant analysis of sequencing data"
arch=(x86_64)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-3.0-or-later')
depends=(
  r
  zlib
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('e89748afba3c2245eeeacf0b3bf6c5e2')
b2sums=('a483b35cb299cfc6b8aee011a8608fcf86a393bce3424033e6651495d31283350562ca62730f6dcc9161695ee489382430ff563e17935c5bba451b6e5ee8649c')

build() {
  mkdir build
  R CMD INSTALL -l build "$_pkgname"
}

package() {
  install -d "$pkgdir/usr/lib/R/library"
  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}