# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>

_pkgname=SPLINTER
_pkgver=1.22.0
pkgname=r-${_pkgname,,}
pkgver=1.22.0
pkgrel=1
pkgdesc='Splice Interpreter of Transcripts'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('GPL')
depends=(
  r
  r-biomart
  r-biostrings
  r-bsgenome.mmusculus.ucsc.mm9
  r-genomeinfodb
  r-genomicalignments
  r-genomicfeatures
  r-genomicranges
  r-ggplot2
  r-googlevis
  r-gviz
  r-iranges
  r-plyr
  r-s4vectors
  r-seqlogo
  r-stringr
)
optdepends=(
  r-biocstyle
  r-knitr
  r-rmarkdown
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('fde70ce983950c4d37e99ce420006e96aa1686c1a06a250726b7205567b071cf')

build() {
  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}

package() {
  install -dm0755 "${pkgdir}/usr/lib/R/library"
  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et: