# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>

_pkgname=TENxVisiumData
_pkgver=1.12.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Visium spatial gene expression data by 10X Genomics"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('MIT')
depends=(
  r-experimenthub
  r-spatialexperiment
)
optdepends=(
  r-biocstyle
  r-knitr
  r-rmarkdown
)
source=("https://bioconductor.org/packages/release/data/experiment/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('697e98d0decd845650ef3fd5c75b598e')
b2sums=('a32b2a1f2a0078f0c6a21393404fb56dac3a43f590c8b47dd15f2735832db0c4e5520001ffc5b1a8c098ae0ca4b97667dac05a7e05f341d786416c6137b2ae57')

build() {
  mkdir build
  R CMD INSTALL -l build "$_pkgname"
}

package() {
  install -d "$pkgdir/usr/lib/R/library"
  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"

  install -d "$pkgdir/usr/share/licenses/$pkgname"
  ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
}