# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>

_pkgname=TissueEnrich
_pkgver=1.24.1
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Tissue-specific gene enrichment analysis"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('MIT')
depends=(
  r-dplyr
  r-ggplot2
  r-gseabase
  r-summarizedexperiment
  r-tidyr
)
optdepends=(
  r-knitr
  r-rmarkdown
  r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('dd520f8d4fe7eb07073f64f2df777dad')
b2sums=('c73ce8666f4ea1a659de0cc8d4ab5a5ab027c7bc2d15e0dbf4e7c73701116460406e9903dfdc84ac3f60f246077b243d9795f2e77d75d1d69452213158a2ce74')

build() {
  mkdir build
  R CMD INSTALL -l build "$_pkgname"
}

package() {
  install -d "$pkgdir/usr/lib/R/library"
  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"

  install -d "$pkgdir/usr/share/licenses/$pkgname"
  ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
}