# Maintainer: Clint Valentine pkgname=snpeff pkgver=4_3t pkgrel=1 pkgdesc="Genetic variant annotation and effect prediction toolbox" arch=('any') url="http://snpeff.sourceforge.net/" license=('LGPLv3') depends=('java-runtime>=8') provides=('snpeff') conflicts=('snpeff') source=( "http://sourceforge.net/projects/${pkgname}/files/snpEff_v${pkgver}_core.zip" "snpeff" "snpsift" ) md5sums=( '1fa84a703580a423e27f1e14a945901c' '9f0415d2e713f0acffec4d88253e769d' '3a2f8a17dfffca77375806d2dee12b0c' ) package() { cd "${srcdir}/" install -Dm644 "snpEff/snpEff.jar" "${pkgdir}/usr/share/java/snpEff_v${pkgver}/snpEff.jar" install -Dm644 "snpEff/SnpSift.jar" "${pkgdir}/usr/share/java/snpEff_v${pkgver}/SnpSift.jar" install -Dm644 "snpEff/snpEff.config" "${pkgdir}/usr/share/java/snpEff_v${pkgver}/snpEff.config" install -Dm755 "snpeff" "${pkgdir}/usr/bin/snpEff" install -Dm755 "snpsift" "${pkgdir}/usr/bin/SnpSift" }