diff -uBw -aur tophat-2.1.1/src/juncs_db.cpp tophat-2.1.1-patched/src/juncs_db.cpp
--- tophat-2.1.1/src/juncs_db.cpp	2016-02-14 19:21:17.354079000 +0100
+++ tophat-2.1.1-patched/src/juncs_db.cpp	2016-06-02 11:26:34.097425159 +0200
@@ -338,7 +338,7 @@
 			uint32_t left_coord = atoi(scan_left_coord);
 			uint32_t right_coord = atoi(scan_right_coord);
 			bool antisense = *orientation == '-';
-			junctions.insert(make_pair<Junction, JunctionStats>(Junction(ref_id, left_coord, right_coord, antisense), JunctionStats()));
+			junctions.insert(make_pair(Junction(ref_id, left_coord, right_coord, antisense), JunctionStats()));
 		}
 	}

diff -uBw -aur tophat-2.1.1/src/tophat_reports.cpp tophat-2.1.1-patched/src/tophat_reports.cpp
--- tophat-2.1.1/src/tophat_reports.cpp	2016-02-23 22:20:44.320710000 +0100
+++ tophat-2.1.1-patched/src/tophat_reports.cpp	2016-06-02 11:26:22.057239478 +0200
@@ -2705,7 +2705,7 @@
 				junction_stat.gtf_match = true;
 				junction_stat.accepted = true;

-				gtf_junctions.insert(make_pair<Junction, JunctionStats>(Junction(ref_id, left_coord, right_coord, antisense), junction_stat));
+				gtf_junctions.insert(make_pair(Junction(ref_id, left_coord, right_coord, antisense), junction_stat));
 			}
 		}
 		fprintf(stderr, "Loaded %d GFF junctions from %s.\n", (int)(gtf_junctions.size()), gtf_juncs.c_str());