Description: upgrade pamlX from qt4 to qt5
Author: Guoyi Zhang <guoyizhang@malacology.net>
Last-Update: 2024-02-06
---
This patch header follows AGPL-3.0
diff --git a/main.cpp b/main.cpp
index 31edde9..6dfbad1 100644
--- a/main.cpp
+++ b/main.cpp
@@ -2,8 +2,8 @@
 // Copyright (C) 2012 Bo Xu <xuxbob@gmail.com>
 //------------------------------------------------
 
-#include <QtGui/QApplication>
-#include <QSplashScreen>
+#include <QtWidgets/QApplication>
+#include <QtWidgets/QSplashScreen>
 #include "mainwindow.h"
 #include "info.h"
 #include "mydebug.h"
diff --git a/mainwindow.cpp b/mainwindow.cpp
index 42f53b6..30ace7d 100644
--- a/mainwindow.cpp
+++ b/mainwindow.cpp
@@ -123,7 +123,7 @@ MainWindow::MainWindow(QWidget *parent) :
     menuRecent_Files->setIcon(icon);
     actionSelect_All->setIcon(icon);
 
-    actionConfiguration->setText(QApplication::translate("MainWindow", "&Preferences...", 0, QApplication::UnicodeUTF8));
+    actionConfiguration->setText(QApplication::translate("MainWindow", "&Preferences..."));
 #endif
 
     //Toolbar
@@ -193,7 +193,7 @@ MainWindow::MainWindow(QWidget *parent) :
 "<p align=\"center\" style=\"-qt-paragraph-type:empty; margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px; font-family:'SimSun'; font-size:9pt;\"></p>\n"
 "<p align=\"center\" style=\" margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;\"><a href=\"http://abacus.gene.ucl.ac.uk/software/paml.html\"><span style=\" font-family:'Herculanum'; font-size:20pt; text-decoration: none; color:#000000;\">PAML Software Website</span></a></p>\n"
 "<p align=\"center\" style=\"-qt-paragraph-type:empty; margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px; font-family:'SimSun'; font-size:20pt; font-weight:600;\"></p>\n"
-"<p align=\"center\" style=\"-qt-paragraph-type:empty; margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px; font-family:'SimSun'; font-size:9pt;\"></p></body></html>", 0, QApplication::UnicodeUTF8));
+"<p align=\"center\" style=\"-qt-paragraph-type:empty; margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px; font-family:'SimSun'; font-size:9pt;\"></p></body></html>"));
 
     QFont font2;
     font2.setFamily(QString::fromUtf8("Comic Sans MS"));
@@ -3520,7 +3520,7 @@ void MainWindow::on_comboBox_37_currentIndexChanged(int index)
     case 1:
         comboBox_39->setItemText(0, tr("1: b"));
         comboBox_39->insertItems(1, QStringList()
-         << QApplication::translate("MainWindow", "2: two branch types", 0, QApplication::UnicodeUTF8)
+         << QApplication::translate("MainWindow", "2: two branch types")
         );
         comboBox_39->setItemData(0, 1);
         comboBox_39->setItemData(1, 2);
@@ -3582,9 +3582,9 @@ void MainWindow::on_comboBox_37_currentIndexChanged(int index)
     default:
         comboBox_39->setItemText(0, tr("0: one"));
         comboBox_39->insertItems(1, QStringList()
-         << QApplication::translate("MainWindow", "1: b", 0, QApplication::UnicodeUTF8)
-         << QApplication::translate("MainWindow", "2: 2 or more dN/dS", 0, QApplication::UnicodeUTF8)
-         << QApplication::translate("MainWindow", "3:", 0, QApplication::UnicodeUTF8)
+         << QApplication::translate("MainWindow", "1: b")
+         << QApplication::translate("MainWindow", "2: 2 or more dN/dS")
+         << QApplication::translate("MainWindow", "3:")
         );
         if(!ok) currentItemData = 0;
         comboBox_39->setCurrentIndex(currentItemData);
@@ -3650,10 +3650,10 @@ void MainWindow::on_comboBox_31_currentIndexChanged(int index)
     if( index == 1 && num != 4 ) {
         if(num == 0) {
             comboBox_39->insertItems(0, QStringList()
-             << QApplication::translate("MainWindow", "0: one", 0, QApplication::UnicodeUTF8)
-             << QApplication::translate("MainWindow", "1: b", 0, QApplication::UnicodeUTF8)
-             << QApplication::translate("MainWindow", "2: 2 or more dN/dS", 0, QApplication::UnicodeUTF8)
-             << QApplication::translate("MainWindow", "3:", 0, QApplication::UnicodeUTF8)
+             << QApplication::translate("MainWindow", "0: one")
+             << QApplication::translate("MainWindow", "1: b")
+             << QApplication::translate("MainWindow", "2: 2 or more dN/dS")
+             << QApplication::translate("MainWindow", "3:")
            );
         }
         else {
@@ -3682,14 +3682,14 @@ void MainWindow::on_comboBox_31_currentIndexChanged(int index)
     if( (index == 2 || index == 3) && num != 8 ) {
         if(num == 0) {
             comboBox_39->insertItems(0, QStringList()
-             << QApplication::translate("MainWindow", "0: poisson", 0, QApplication::UnicodeUTF8)
-             << QApplication::translate("MainWindow", "1: proportional", 0, QApplication::UnicodeUTF8)
-             << QApplication::translate("MainWindow", "2: Empirical", 0, QApplication::UnicodeUTF8)
-             << QApplication::translate("MainWindow", "3: Empirical+F", 0, QApplication::UnicodeUTF8)
-             << QApplication::translate("MainWindow", "6: FromCodon", 0, QApplication::UnicodeUTF8)
-             << QApplication::translate("MainWindow", "7: AAClasses", 0, QApplication::UnicodeUTF8)
-             << QApplication::translate("MainWindow", "8: REVaa_0", 0, QApplication::UnicodeUTF8)
-             << QApplication::translate("MainWindow", "9: REVaa(nr=189)", 0, QApplication::UnicodeUTF8)
+             << QApplication::translate("MainWindow", "0: poisson")
+             << QApplication::translate("MainWindow", "1: proportional")
+             << QApplication::translate("MainWindow", "2: Empirical")
+             << QApplication::translate("MainWindow", "3: Empirical+F")
+             << QApplication::translate("MainWindow", "6: FromCodon")
+             << QApplication::translate("MainWindow", "7: AAClasses")
+             << QApplication::translate("MainWindow", "8: REVaa_0")
+             << QApplication::translate("MainWindow", "9: REVaa(nr=189)")
             );
         }
         else {
@@ -3702,10 +3702,10 @@ void MainWindow::on_comboBox_31_currentIndexChanged(int index)
             comboBox_39->setItemText(2, tr("2: Empirical"));
             comboBox_39->setItemText(3, tr("3: Empirical+F"));
             comboBox_39->insertItems(4, QStringList()
-             << QApplication::translate("MainWindow", "6: FromCodon", 0, QApplication::UnicodeUTF8)
-             << QApplication::translate("MainWindow", "7: AAClasses", 0, QApplication::UnicodeUTF8)
-             << QApplication::translate("MainWindow", "8: REVaa_0", 0, QApplication::UnicodeUTF8)
-             << QApplication::translate("MainWindow", "9: REVaa(nr=189)", 0, QApplication::UnicodeUTF8)
+             << QApplication::translate("MainWindow", "6: FromCodon")
+             << QApplication::translate("MainWindow", "7: AAClasses")
+             << QApplication::translate("MainWindow", "8: REVaa_0")
+             << QApplication::translate("MainWindow", "9: REVaa(nr=189)")
             );
         }
         comboBox_39->setItemData(0, 0);
@@ -3722,20 +3722,20 @@ void MainWindow::on_comboBox_31_currentIndexChanged(int index)
     if( index == 1 && num != 5 ) {
         if(num == 0) {
             comboBox_40->insertItems(0, QStringList()
-             << QApplication::translate("MainWindow", "0: rates", 0, QApplication::UnicodeUTF8)
-             << QApplication::translate("MainWindow", "1: separate", 0, QApplication::UnicodeUTF8)
-             << QApplication::translate("MainWindow", "2: diff pi", 0, QApplication::UnicodeUTF8)
-             << QApplication::translate("MainWindow", "3: diff kapa", 0, QApplication::UnicodeUTF8)
-             << QApplication::translate("MainWindow", "4: all diff", 0, QApplication::UnicodeUTF8)
+             << QApplication::translate("MainWindow", "0: rates")
+             << QApplication::translate("MainWindow", "1: separate")
+             << QApplication::translate("MainWindow", "2: diff pi")
+             << QApplication::translate("MainWindow", "3: diff kapa")
+             << QApplication::translate("MainWindow", "4: all diff")
             );
         }
         else {
             comboBox_40->setItemData(0, QVariant::Invalid);
             comboBox_40->setItemData(1, QVariant::Invalid);
             comboBox_40->insertItems(2, QStringList()
-             << QApplication::translate("MainWindow", "2: diff pi", 0, QApplication::UnicodeUTF8)
-             << QApplication::translate("MainWindow", "3: diff kapa", 0, QApplication::UnicodeUTF8)
-             << QApplication::translate("MainWindow", "4: all diff", 0, QApplication::UnicodeUTF8)
+             << QApplication::translate("MainWindow", "2: diff pi")
+             << QApplication::translate("MainWindow", "3: diff kapa")
+             << QApplication::translate("MainWindow", "4: all diff")
             );
         }
         comboBox_40->setItemData(0, 0);
@@ -3747,8 +3747,8 @@ void MainWindow::on_comboBox_31_currentIndexChanged(int index)
     if( (index == 2 || index == 3) && num != 2 ) {
         if(num == 0) {
             comboBox_40->insertItems(0, QStringList()
-             << QApplication::translate("MainWindow", "0: rates", 0, QApplication::UnicodeUTF8)
-             << QApplication::translate("MainWindow", "1: separate", 0, QApplication::UnicodeUTF8)
+             << QApplication::translate("MainWindow", "0: rates")
+             << QApplication::translate("MainWindow", "1: separate")
             );
         }
         else {
diff --git a/mainwindow.h b/mainwindow.h
index 303b69d..6dba937 100644
--- a/mainwindow.h
+++ b/mainwindow.h
@@ -5,6 +5,10 @@
 #ifndef MAINWINDOW_H
 #define MAINWINDOW_H
 
+#include <QPrinter>
+#include <QButtonGroup>
+#include <QMimeData>
+
 #include "ui_mainwindow.h"
 
 #include "engine.h"
diff --git a/mcmctreeengine.cpp b/mcmctreeengine.cpp
index d5891f9..ba00c56 100644
--- a/mcmctreeengine.cpp
+++ b/mcmctreeengine.cpp
@@ -328,8 +328,8 @@ int MCMCTreeEngine::compareVersion(const QString& versionStr) const
     QString mRevision, revision;
     char c;
 
-    QTextStream(mVersion.toAscii()) >> mMajor >> c >> mMinor >> mRevision;
-    QTextStream(versionStr.toAscii()) >> major >> c >> minor >> revision;
+    QTextStream(mVersion.toUtf8()) >> mMajor >> c >> mMinor >> mRevision;
+    QTextStream(versionStr.toUtf8()) >> major >> c >> minor >> revision;
 
     int ret;
 
diff --git a/mcmctreeengine.h b/mcmctreeengine.h
index 4a6634a..0403b2b 100644
--- a/mcmctreeengine.h
+++ b/mcmctreeengine.h
@@ -5,6 +5,9 @@
 #ifndef MCMCTREEENGINE_H
 #define MCMCTREEENGINE_H
 
+#include <QString>
+#include <QTextStream>
+
 #include "engine.h"
 
 #if defined(Q_OS_WIN32) || defined(Q_OS_MAC) || defined(Q_OS_LINUX)
diff --git a/pamlX.pro b/pamlX.pro
index fab0064..9b5b5fc 100644
--- a/pamlX.pro
+++ b/pamlX.pro
@@ -6,7 +6,7 @@
 #
 #-------------------------------------------------
 
-QT       += core gui
+QT       += core gui widgets printsupport
 
 TARGET = pamlX
 TEMPLATE = app