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pkgbase = r-granie
pkgdesc = Reconstruction cell type specific gene regulatory networks including enhancers using chromatin accessibility and RNA-seq data
pkgver = 1.6.1
pkgrel = 4
url = https://bioconductor.org/packages/GRaNIE
arch = any
license = Artistic-2.0
depends = r-annotationhub
depends = r-biomart
depends = r-biostrings
depends = r-checkmate
depends = r-circlize
depends = r-colorspace
depends = r-complexheatmap
depends = r-data.table
depends = r-deseq2
depends = r-dplyr
depends = r-ensembldb
depends = r-forcats
depends = r-futile.logger
depends = r-genomeinfodb
depends = r-genomicranges
depends = r-ggplot2
depends = r-gridextra
depends = r-igraph
depends = r-limma
depends = r-magrittr
depends = r-matrixstats
depends = r-patchwork
depends = r-progress
depends = r-rcolorbrewer
depends = r-readr
depends = r-reshape2
depends = r-rlang
depends = r-s4vectors
depends = r-scales
depends = r-stringr
depends = r-summarizedexperiment
depends = r-tibble
depends = r-tidyr
depends = r-tidyselect
depends = r-topgo
depends = r-viridis
optdepends = r-biocfilecache
optdepends = r-biocparallel
optdepends = r-biocstyle
optdepends = r-bsgenome.dmelanogaster.ucsc.dm6
optdepends = r-bsgenome.hsapiens.ucsc.hg19
optdepends = r-bsgenome.hsapiens.ucsc.hg38
optdepends = r-bsgenome.mmulatta.ucsc.rhemac10
optdepends = r-bsgenome.mmusculus.ucsc.mm10
optdepends = r-bsgenome.mmusculus.ucsc.mm9
optdepends = r-bsgenome.rnorvegicus.ucsc.rn6
optdepends = r-bsgenome.rnorvegicus.ucsc.rn7
optdepends = r-chipseeker
optdepends = r-clusterprofiler
optdepends = r-csaw
optdepends = r-dose
optdepends = r-edaseq
optdepends = r-ihw
optdepends = r-jaspar2022
optdepends = r-knitr
optdepends = r-ldlinkr
optdepends = r-motifmatchr
optdepends = r-org.dm.eg.db
optdepends = r-org.hs.eg.db
optdepends = r-org.mm.eg.db
optdepends = r-org.mmu.eg.db
optdepends = r-org.rn.eg.db
optdepends = r-purrr
optdepends = r-rbioapi
optdepends = r-reactomepa
optdepends = r-testthat
optdepends = r-tfbstools
optdepends = r-txdb.dmelanogaster.ucsc.dm6.ensgene
optdepends = r-txdb.hsapiens.ucsc.hg19.knowngene
optdepends = r-txdb.hsapiens.ucsc.hg38.knowngene
optdepends = r-txdb.mmulatta.ucsc.rhemac10.refgene
optdepends = r-txdb.mmusculus.ucsc.mm10.knowngene
optdepends = r-txdb.mmusculus.ucsc.mm9.knowngene
optdepends = r-txdb.rnorvegicus.ucsc.rn6.refgene
optdepends = r-txdb.rnorvegicus.ucsc.rn7.refgene
optdepends = r-variancepartition
optdepends = r-wgcna
source = https://bioconductor.org/packages/release/bioc/src/contrib/GRaNIE_1.6.1.tar.gz
md5sums = d9db703063398ccd263ce6b54def9266
b2sums = 79192e9cb4153a1ebf23e76daa0c9629bcdf36545108587914bf02e624cdd00033ccc7ec998bcdef229a8a9ea7bab3bc7d9806329350f6712d684429016d08cb
pkgname = r-granie
|