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pkgbase = tophat
pkgdesc = fast splice junction mapper for RNA-Seq reads
pkgver = 2.1.0
pkgrel = 2
url = http://ccb.jhu.edu/software/tophat/index.shtml
arch = x86_64
arch = i686
license = custom
makedepends = boost
depends = boost-libs
depends = bowtie2
depends = python2
source = http://ccb.jhu.edu/software/tophat/downloads/tophat-2.1.0.tar.gz
source = https://github.com/seqan/seqan/archive/seqan-v1.4.2.tar.gz
source = fix_build_w_seqan1.4.patch
md5sums = 1ace6e96fa692af6ed885bad5fe7c4d7
md5sums = 7b0080b01feeb223e054dabef53d6fc5
md5sums = 93d47e54408b7b5eb4132d65f5dd5085
pkgname = tophat
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