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# Maintainer: Eric Biggers <ebiggers3 at gmail dot com>
pkgname=abyss
pkgver=2.1.5
pkgrel=1
pkgdesc="Assembly By Short Sequences - a de novo, parallel, paired-end sequence assembler"
arch=("i686" "x86_64")
url="http://www.bcgsc.ca/platform/bioinfo/software/abyss"
license=("GPL3")
depends=("make" "openmpi" "sqlite")
makedepends=("boost" "sparsehash")
source=("http://www.bcgsc.ca/platform/bioinfo/software/abyss/releases/${pkgver}/abyss-${pkgver}.tar.gz")
build() {
cd "${pkgname}-${pkgver}"
LDFLAGS="${LDFLAGS:-} -L/usr/lib/openmpi" ./configure --prefix=/usr
make
}
check() {
cd "${pkgname}-${pkgver}"
make check
}
package() {
cd "${pkgname}-${pkgver}"
make DESTDIR="${pkgdir}" install
}
sha256sums=('65bfc8241e6ff5adf7601ae4ae93a75e3db86d6bff5d593c75aaff7f0ef41757')
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