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# Maintainer: Bipin Kumar <bipin@ccmb.res.in>
pkgname=agat
_pkgname=AGAT
pkgver=1.0.0
pkgrel=3
pkgdesc="Another Gtf/Gff Analysis Toolkit is a suite of tools to handle gene annotations in GTF/GFF format. doi:10.5281/zenodo.3552717"
arch=('any')
url='https://github.com/NBISweden/AGAT'
license=('GPL3')
depends=(
'perl-bioperl'
'perl-carp-clan'
'perl-clone'
'perl-file-share'
'perl-file-sharedir'
'perl-file-sharedir-install'
'perl-graph'
'perl-lwp-protocol-https'
'perl-lwp-useragent-determined'
'perl-moose'
'perl-sort-naturally'
'perl-yaml-libyaml'
)
source=($pkgname-$pkgver.tar.gz::https://github.com/NBISweden/AGAT/archive/refs/tags/v$pkgver.tar.gz)
sha512sums=('937b03f5f76afe0a190760046ab05f3c91b7a4582d2cde0053479659e7da460221d7051bd307e06239e5b5786f050eb7492ca4cc8744f022254ab9e3eb49c45a')
options=('!emptydirs' 'purge')
prepare() {
cd $_pkgname-$pkgver
sed -i '51d' Makefile.PL #remove unneeded json dependency from makefile
}
build() {
cd $_pkgname-$pkgver
perl Makefile.PL INSTALLDIRS=vendor
make PREFIX="$pkgdir"/usr INSTALLDIR=${pkgdir}/usr/bin
}
package() {
cd $_pkgname-$pkgver
install -dm755 "$pkgdir"/usr/bin/vendor_perl
make install DESTDIR="$pkgdir"
find "$pkgdir" \( -name .packlist -o -name perllocal.pod \) -delete
}
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