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# Maintainer: Liam Timms <timms5000@gmail.com>
# Contributor: Kai Xuan <woxuankai at gmail dot com>
_pkgname='ants'
pkgname="${_pkgname}-git"
pkgver=v2.3.5.r64.g221dad77
pkgrel=1
pkgdesc='Advanced Normalization Tools (ANTs) computes high-dimensional \
mappings to capture the statistics of brain structure and function'
arch=('i686' 'x86_64')
url='http://www.picsl.upenn.edu/ANTS/'
license=('Apache')
depends=('r' 'vtk' 'perl' 'gdcm')
makedepends=('git' 'cmake')
optdepends=()
provides=("${_pkgname}")
conflicts=("${_pkgname}")
source=("${pkgname}"'::git+https://github.com/stnava/ANTs.git'
'0001-fix-for-GDCM-build.patch')
sha256sums=('SKIP'
'f20685afed8f3fdc005b7c6924cee39350f0eac1e6010cfe9fee78a517d7e684')
pkgver() {
cd "${srcdir}/${pkgname}"
git describe --long --tags | sed 's/\([^-]*-g\)/r\1/;s/-/./g'
}
prepare() {
cd "${srcdir}/${pkgname}"
patch -Np1 -i "${srcdir}"/0001-fix-for-GDCM-build.patch
mkdir -p antsBuild
}
build() {
cd "${srcdir}/${pkgname}/antsBuild"
cmake \
-DBUILD_ALL_ANTS_APPS=ON \
-DBUILD_SHARED_LIBS=OFF \
-DBUILD_STYLE_UTILS=OFF \
-DBUILD_TESTING=ON \
-DCMAKE_BUILD_TYPE=Release \
-DCMAKE_INSTALL_PREFIX=/opt/ANTs \
-DEXTERNAL_PROJECT_BUILD_TYPE=Release \
-DFORCE_EXTERNAL_BUILDS=OFF \
-DITK_BUILD_MINC_SUPPORT=OFF \
-DITK_VERSION_MAJOR=5 \
-DOLD_BASELINE_TESTS=OFF \
-DRUN_LONG_TESTS=ON \
-DRUN_SHORT_TESTS=ON \
-DSuperBuild_ANTS_USE_GIT_PROTOC=ON \
-DUSE_SYSTEM_ITK=OFF \
-DUSE_SYSTEM_SlicerExecutionMode=OFF \
-DUSE_SYSTEM_VTK=ON \
-DUSE_VTK=ON \
..
make -j1
}
package() {
cd "${srcdir}/${pkgname}/antsBuild/ANTS-build"
make DESTDIR="${pkgdir}" install
}
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