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# Maintainer: András Wacha <awacha@gmail.com>
pkgname=atsas
pkgver=3.1.3
_pkgrel_upstream=1
pkgrel=1
pkgdesc="A program suite for small-angle scattering data analysis from biological macromolecules"
arch=('x86_64')
url="https://www.embl-hamburg.de/biosaxs/software.html"
license=('custom')
options=('!strip')
depends=( 'libgfortran.so=5' 'qt5-base' 'qt5-tools' 'qt5-svg' )
install=install
# !!! You have to download the sources yourself from https://www.embl-hamburg.de/biosaxs/download.html
# !!! Use the Ubuntu-22.04 version!
source=("local://ATSAS-${pkgver}-${_pkgrel_upstream}_amd64.tar.gz" 'license.md' 'atsas.sh' 'atsas.fish' 'atsas.csh')
sha512sums=('78e413557fbeb1d6a5f191f9e323f8cb1573d2235ed13d854591f056fd806a61137ad18e17927fd05606744dc6e340dae903c274fb47823a325dbe43513a9e3c'
'3f728fb538b236f0ddce8a7c86303d14c529da4f117eb5f4c87ef5f0fef52dea3ae7650fc439316c08628dc641893ab10f85890577fcb8e67b9398fdbbfa773f'
'293ce54e3ec40b2b9173e123a9a98027b69859b28bf970d91d6ace3ae60d30a00e7c2e89fc02755874967a6e34446ea32084a9335bf2f3b41aa30458f7fcfd54'
'5c654541e4a778ac2e27bccb8952bbeff79cb5f11339b705b26eb9d4d2c31511bdbc3ecfd31bbe538c82a725617ff1053a0536f81b9231e972e5947010ed74c0'
'0dba1e27b46fbbb272c4afeef06368c99ae28eb6686c6cfc6fe68169f9729a6d63a039a8909cbf17d1eca756ef471c675c438d10749ee35024ddb6579139fdca')
package() {
cd ${srcdir}
# set > environment.txt
ATSAS_ROOT=/opt/ATSAS
mkdir -p "${pkgdir}${ATSAS_ROOT}"
ln -s ATSAS "${pkgdir}/opt/atsas"
cd "${srcdir}/ATSAS-${pkgver}-${_pkgrel_upstream}"
cp -R * "${pkgdir}${ATSAS_ROOT}/"
# remove the supplied Qt5 libraries: use the system-wide ones.
rm "${pkgdir}${ATSAS_ROOT}"/lib/atsas/libQt5*
# rm "${pkgdir}${ATSAS_ROOT}"/lib/atsas/libqwt*
rm -r "${pkgdir}${ATSAS_ROOT}/bin/platforms"
# DEST_BIN_DIR="$ATSAS_ROOT/bin"
# GCC7_LIBDIR=$(ls -d /usr/lib/gcc/${CHOST}/7.*)
# echo "GCC7 libdir: ${GCC7_LIBDIR}"
# mkdir -p "${pkgdir}${DEST_BIN_DIR}"
# mkdir -p "${pkgdir}${ATSAS_ROOT}/libexec"
# for f in ${pkgdir}${ATSAS_ROOT}/bin/*; do
# mv $f ${pkgdir}${ATSAS_ROOT}/libexec
# f=$(basename $f)
# cat >${pkgdir}${DEST_BIN_DIR}/$f <<EOF
##!/bin/sh
#export ATSAS=${ATSAS_ROOT}
#export LD_LIBRARY_PATH=${ATSAS_ROOT}/lib/atsas:${GCC7_LIBDIR}
#${ATSAS_ROOT}/libexec/$f \$*
#EOF
# chmod +x ${pkgdir}${DEST_BIN_DIR}/$f
# done
cd ${srcdir}
mkdir -p "${pkgdir}/usr/share/licenses/${pkgname}"
cp "${srcdir}/license.md" "${pkgdir}/usr/share/licenses/${pkgname}"
mkdir -p "${pkgdir}/etc/profile.d"
cp "${srcdir}/atsas".{csh,sh} "${pkgdir}/etc/profile.d/"
chmod +x "${pkgdir}/etc/profile.d/atsas."{csh,sh}
mv "${pkgdir}${ATSAS_ROOT}/share/applications" "${pkgdir}/usr/share"
mv "${pkgdir}${ATSAS_ROOT}/share/icons" "${pkgdir}/usr/share"
mv "${pkgdir}${ATSAS_ROOT}/share/mime" "${pkgdir}/usr/share"
mkdir -p "${pkgdir}/etc/fish/conf.d"
cp "${srcdir}/atsas.fish" "${pkgdir}/etc/fish/conf.d/atsas.fish"
}
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